Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H11
(373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 175 1e-44
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 93 8e-26
AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical ... 29 1.4
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 27 4.3
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 4.3
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 5.7
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 27 5.7
Z48638-9|CAA88569.1| 202|Caenorhabditis elegans Hypothetical pr... 26 9.9
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 26 9.9
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 175 bits (425), Expect = 1e-44
Identities = 79/110 (71%), Positives = 93/110 (84%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R +PLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLV 371
+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LV
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLV 115
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 92.7 bits (220), Expect(2) = 8e-26
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R +PLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Score = 40.7 bits (91), Expect(2) = 8e-26
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3
Query: 306 LQLLRNAESNADYKGLDVDRLV 371
L LL+NAESNA+YKGLDVD LV
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLV 87
>AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical
protein H41C03.1 protein.
Length = 396
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 309 GAGILQISWANDPVWYQTV*LVH 241
GAG+ +I W N+ W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 168 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 347
RY + EKK+ P + V + + + ++ T R+ +KS + L +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553
Query: 348 GLD 356
G +
Sbjct: 554 GYE 556
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 168 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 347
RY + EKK+ P + V + + + ++ T R+ +KS + L +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553
Query: 348 GLD 356
G +
Sbjct: 554 GYE 556
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/91 (23%), Positives = 37/91 (40%)
Frame = +3
Query: 60 NPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGR 239
N +S + G++ H T T K+PL + ++ + K C F R + +
Sbjct: 1036 NTPRSSISGGTHQTTHTAPTSRTHHDANKVPLNNVYKVIRFYSFWKTCTSFHRIVTMIDK 1095
Query: 240 CAQAKQFGTTQGRWPKKSAEFLLQLLRNAES 332
+ T+ G K F+ L RNA++
Sbjct: 1096 VVD--EPSTSSGGTTFKKRLFVQYLWRNAKA 1124
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 122 IGVLEVNTKV*ATRFT*LSRVIRLPRVTTHFLFLPGEN 9
+G+L + V R + RVI++ TH +FL EN
Sbjct: 121 LGLLSDGSPVSEPRLVPVPRVIQIEMTNTHTIFLTAEN 158
>Z48638-9|CAA88569.1| 202|Caenorhabditis elegans Hypothetical
protein ZK892.7 protein.
Length = 202
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 104 SLQEHL*NCHGYKKTASSPCC 166
S+++HL + HGY S CC
Sbjct: 57 SIKKHLQHAHGYVDVQSCSCC 77
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 25.8 bits (54), Expect = 9.9
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 293 RFLGPTTLCGTKLFSLCTTANSTVKTTEGNAFLLFCHIL*VTDSTAKRQFSYSHGSFIGV 114
+FL TLC K+ ++ K GN+ LL CH + D+ + + + V
Sbjct: 139 KFLSSFTLCYHKITNVVVRIGPK-KGPSGNSLLLNCHFDTMPDTPGATDDAVACTIMMDV 197
Query: 113 LEV 105
LEV
Sbjct: 198 LEV 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,410,630
Number of Sequences: 27780
Number of extensions: 195854
Number of successful extensions: 517
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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