Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H10
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   216   8e-58
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   213   6e-57
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   108   2e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    75   3e-15
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    29   0.18 
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   1.6  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   2.2  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   2.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   5.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   6.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   6.7  
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    24   6.7  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    24   8.8  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    24   8.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    24   8.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  216 bits (528), Expect = 8e-58
 Identities = 98/120 (81%), Positives = 107/120 (89%)
 Frame = +2

Query: 11  TRVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 190
           T VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSI
Sbjct: 183 TSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSI 242

Query: 191 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 370
           TASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE  SV EITN CFEP
Sbjct: 243 TASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  213 bits (521), Expect = 6e-57
 Identities = 96/120 (80%), Positives = 107/120 (89%)
 Frame = +2

Query: 11  TRVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 190
           T VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSI
Sbjct: 179 TSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSI 238

Query: 191 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 370
           TASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE  SV EITN CFEP
Sbjct: 239 TASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  108 bits (260), Expect = 2e-25
 Identities = 48/117 (41%), Positives = 75/117 (64%)
 Frame = +2

Query: 17  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 196
           VVEPYN+ L+ H  +E+SD  F +DNEA+  I    L I+ P+Y +LN L+  +++ +T 
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238

Query: 197 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 367
           S RF G LN DL +   N+VP+PR+HF +V +AP+ +   +  + +SV E+T   F+
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 75.4 bits (177), Expect = 3e-15
 Identities = 34/94 (36%), Positives = 54/94 (57%)
 Frame = +2

Query: 17  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 196
           VV+PYNS+L       ++D   ++DN A+  I    L  + PT+   N+L+  ++S+ T 
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241

Query: 197 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 298
           +LR+ G +N DL     +L+P PR HF L +Y P
Sbjct: 242 TLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 185
           ++ S+ T KP +     TW +N R  P S+   +   H
Sbjct: 37  VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 226 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 131
           DIE   E    GN+ ++L +K I++  G+ FN
Sbjct: 58  DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 84  WSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTWC 257
           W T KP +  A   W ++      + + +  S   +PP   S A  +    + RP WC
Sbjct: 428 WRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPP--NSRARLLGF-LNGRPEWC 482


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 129  ILNARPTPTSIVLSARSYHRL 191
            I NAR   T  V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 215 ALNVDLTEFQTNLVPYPRIHFPLVT 289
           A +V++ E +TN +P    HFP  T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 170 GQIVSSITASLRFDGALNVDLTEFQTNLVPYP 265
           G  ++ +   L+ +G L +D    +TN  P P
Sbjct: 500 GSTITGVNRELQDEGRLEIDAKSSKTNTPPSP 531


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 87  STMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTW 254
           ST   S TS+   W   A+P  ++   +   + +  P    +AP++S+  SS P W
Sbjct: 413 STSVSSSTSSPAPW---AKPASSAAPSNPAPWQQ--PAAPQSAPALSMNPSSLPPW 463


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 120 VTWILNARPTPTSIVLSARSYHRLPP 197
           V W   +RP   S V+ AR  H LPP
Sbjct: 67  VIWGTVSRPHGNSGVVRARFTHNLPP 92


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 5   FGTRVVEPYNSILTTHTTLEH 67
           FG    EP    L+ HT LEH
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEH 126


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 151 QPQSSYRPDRIIDYRLSAFRRRPQCRSNGVPDQLGALPTYP 273
           QP SS  P+   + +L + +    C +N +PD + + P  P
Sbjct: 38  QPNSSTVPEVKSNTQLESKQSSIDCNTNAIPDSV-SFPRLP 77


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 297 GAYVTSGKWIRG*GTKLVWNSVRSTLRAPSKRREAVI 187
           G Y    +W+     ++ WN     LR PS R  A+I
Sbjct: 419 GRYAMYIEWLMQLSEEVGWNIEVEPLRIPSTRNYALI 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,621
Number of Sequences: 5004
Number of extensions: 31801
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)