Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H09
         (231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    26   3.7  
03_02_0390 + 8056006-8057502                                           26   4.9  
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    25   6.5  
01_06_0479 + 29631435-29631608,29632769-29632864,29633065-296331...    25   6.5  
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     25   8.6  

>09_04_0072 +
           14323449-14324274,14324351-14324447,14325175-14325277,
           14325359-14325412,14325495-14325569,14325597-14325650,
           14325687-14325755,14325840-14325923,14326115-14326312,
           14326428-14326927,14327011-14327140,14328226-14328317,
           14328776-14328954,14329114-14329316,14329398-14329499,
           14330047-14330209,14330690-14330979,14331088-14331225,
           14331311-14331390,14331510-14331606,14331685-14331814,
           14331921-14332162
          Length = 1301

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 51  SNCNANSESYSKLHSYSDTSGRSSHSIPNISLGCQMI 161
           S+C+ N  S   +  Y D S R  H       GCQ +
Sbjct: 759 SSCDKNGRSSKSVVLYEDASKRLLHQFTAALRGCQQM 795


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 24  GAGA-DLLISSNCNANSESYSKLHSYSDTSGRSSHSIPNIS 143
           GAGA DL  +S  +A++ S++   ++S    RSS S+P+ S
Sbjct: 28  GAGALDLSFTSTASASTSSFTTATTFS---ARSSLSLPSFS 65


>03_06_0311 +
           33054022-33054118,33056109-33056353,33057058-33057398,
           33057488-33057538,33057623-33057695,33058229-33058333,
           33060124-33060206,33061209-33061249,33061659-33063120,
           33063368-33064847,33064958-33065122,33065232-33065424,
           33065502-33065613,33065702-33065849,33065951-33066148,
           33066234-33066512,33066612-33066773,33066872-33067090,
           33067481-33067612
          Length = 1861

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 18  IFGAGADLLISSNCNANSESYSKLHSYSDTSGRSSHSIP 134
           +FG+G       +C + +E  ++LHS S  SGR    +P
Sbjct: 768 VFGSGFMREDDGSCCSTAE-LAQLHSSSSKSGREDPGVP 805


>01_06_0479 +
           29631435-29631608,29632769-29632864,29633065-29633106,
           29633220-29633306,29635246-29635272,29635536-29635916
          Length = 268

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 3   SDCGPIFGAGADLLISSNCNANSESYSKLHSYSDTSGRSSHSIPNISLGCQM 158
           SD    F  G D+  ++  NAN+   + LH   D SG S   IPN   G  M
Sbjct: 221 SDFFDPFDDGMDM--ANTLNANANQSASLHVTDDKSGHS--LIPNPKSGPHM 268


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 57   CNANSESYSKLHSYSDTSGRSSHSIPNISLGCQM 158
            CN +S   + L S +   G   +  P   +GCQ+
Sbjct: 920  CNHSSAGLNSLSSIAGPRGSVGYIAPEYGMGCQI 953


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,164
Number of Sequences: 37544
Number of extensions: 49889
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)