Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H09
         (231 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    28   0.77 
Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    25   7.2  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    25   7.2  
U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  CNANSESYSKLHSYSDTSGRSSHSIPNIS 143
           C  N + YS+L   + T   S+HS P+ S
Sbjct: 324 CKENQQKYSELSKMASTDPHSNHSSPSTS 352


>Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.3 protein.
          Length = 331

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 72  ESYSKLHSYSDTSGRSSHSIPNISLGCQMILMIF 173
           E Y KL +   +SGR S S    ++G  M  M+F
Sbjct: 118 ERYHKLANVQRSSGRKSFSRKCYAIGHYMFAMLF 151


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 84  KLHSYSDTSGRSSHSIPNISLGCQM 158
           K+   S+++G + H++PN SLGC++
Sbjct: 252 KVWIVSESAGEA-HNVPNGSLGCRL 275


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 84  KLHSYSDTSGRSSHSIPNISLGCQM 158
           K+   S+++G + H++PN SLGC++
Sbjct: 252 KVWIVSESAGEA-HNVPNGSLGCRL 275


>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 36  DLLISSNCNANSESYSKLHSYSDTS 110
           DL+   NCN + ES+++ H    TS
Sbjct: 13  DLVTPKNCNWDFESFNQHHQEKHTS 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,797,040
Number of Sequences: 27780
Number of extensions: 47094
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)