Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H07
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   228   3e-61
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   228   3e-61
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    44   9e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   2.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   3.2  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   3.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.4  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   9.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   9.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   9.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  228 bits (558), Expect = 3e-61
 Identities = 105/143 (73%), Positives = 122/143 (85%)
 Frame = +1

Query: 31  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 210
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 211 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 390
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 391 AVVHVANVSLLALYKEKKERPRS 459
            VV VA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  228 bits (558), Expect = 3e-61
 Identities = 105/143 (73%), Positives = 122/143 (85%)
 Frame = +1

Query: 31  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 210
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 211 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 390
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 391 AVVHVANVSLLALYKEKKERPRS 459
            VV VA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 30/81 (37%), Positives = 47/81 (58%)
 Frame = +1

Query: 157 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*V 336
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  V +
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 337 AGFGRKGHAVGDIPGVRFAVV 399
            G GR      D PGV++ VV
Sbjct: 104 RG-GR----AQDCPGVQYHVV 119


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 437  SLYRARSDTFAT*TTANLTPGMSPTAWP 354
            S Y+ + DT+AT  T N      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +1

Query: 214 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFG------RKGHAVGDI 375
           PNSA R C+    ++  K V+  +P       I++N  + V G G      + G      
Sbjct: 292 PNSACRSCMGSGTVRERKTVSIDIPPG-----IDDNTVLRVMGAGNDASTAKGGPNAKSR 346

Query: 376 PGVRFAVVHV 405
           PG  FA +HV
Sbjct: 347 PGDLFATIHV 356


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 207 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 28
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 27  D 25
           D
Sbjct: 410 D 410


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 437 SLYRARSDTFAT*TTANLTPGMSPTAWPLRPNPATHTSSFSSM 309
           ++Y + + +F   T  +++ G S     L P PA+ TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 379 QECHQQRGLYDRILPLTP 326
           + C + R LYD++ P+TP
Sbjct: 320 KSCDEARLLYDQLTPITP 337


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 94  WADKEFKKAHMGTRWKANPFGGASHAKGIV 183
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 411 VCYVNHRKSDSRNVTNSVAFTT 346
           V YV+   SDS + TN+V  TT
Sbjct: 183 VSYVSSEPSDSSSSTNTVILTT 204


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 452 GLSFFSLYRARSDTFAT*TTANLTPGMSPTAWPLRPNP 339
           G+ F SL + R +TF      NL   M+ T + L  NP
Sbjct: 873 GVEFSSLAKERINTFIKQGFGNLPICMAKTQYSLSHNP 910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,798
Number of Sequences: 5004
Number of extensions: 42354
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)