Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H07
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 237 2e-63
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 236 7e-63
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 153 9e-38
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 45 3e-05
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.34
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.0
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 4.2
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 28 4.2
12_02_1124 + 26301884-26303725 27 5.6
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 27 5.6
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 27 5.6
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 27 7.3
12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301... 27 9.7
06_02_0330 - 14492988-14493299 27 9.7
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 9.7
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 9.7
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 9.7
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 9.7
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 9.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 237 bits (581), Expect = 2e-63
Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
Frame = +1
Query: 7 GD-RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 183
GD R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIV
Sbjct: 162 GDLRCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIV 220
Query: 184 LEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHA 363
LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHA
Sbjct: 221 LEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHA 280
Query: 364 VGDIPGVRFAVVHVANVSLLALYKEKKERPRS 459
VGDIPGVRF VV V+ VSLLAL+KEKKE+PRS
Sbjct: 281 VGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 232 bits (568), Expect = 9e-62
Identities = 106/141 (75%), Positives = 119/141 (84%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 210
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 211 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 390
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 391 AVVHVANVSLLALYKEKKERP 453
VV V+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 236 bits (577), Expect = 7e-63
Identities = 108/143 (75%), Positives = 121/143 (84%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 210
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 211 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 390
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 391 AVVHVANVSLLALYKEKKERPRS 459
VV V+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 153 bits (370), Expect = 9e-38
Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Frame = +1
Query: 7 GDRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 183
G+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIV
Sbjct: 63 GERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIV 121
Query: 184 LEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 342
LEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 122 LEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 322 DEV*VAGFGRKGHAVGDIPGVRFAVV 399
DEV ++GFG KGHAVGDI GVRF VV
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVV 92
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 122
+R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 183 KRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 247 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 149
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 107
+R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 282 QRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 281 SCRVMVASTTLRRTMRCEWQDSVVKATLLVTFLESD 388
SC + L RT+R +W + +++ L+ T +E D
Sbjct: 581 SCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVD 616
>12_02_1124 + 26301884-26303725
Length = 613
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 408 CYVNHRKSDSRNVTNSVAFT 349
C ++HR S SR NSV FT
Sbjct: 14 CSIHHRASPSRGARNSVRFT 33
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 393 RKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 280
R ++ V + TES SH ++++NV A +HE
Sbjct: 236 RIGEAHRVAANTKLNTESSRSHALLMVNVRRAVKGKHE 273
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 407 AT*TTANLTP-GMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRT 237
+T T+++ P SP+ P+P +T + S++ R P RG+ L +L+ T
Sbjct: 16 STSTSSSSPPDSASPSFSFYHPSPPNYTLAVSNLSCRDPRRGSGGAGLLSWLLGSFST 73
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 387 SDS-RNVTNSVAFTTESCHSHLIVLLNVVEATITRHECCHFLAVLNELYT 241
SDS + V+ V S +SHL LN+ H CC + L++
Sbjct: 599 SDSWKEVSEEVVVYQHSAYSHLSYSLNIHHCFSNSHFCCQGRLAFDALFS 648
>12_01_0384 +
3012359-3012404,3012641-3012825,3013014-3013045,
3013387-3013514,3013695-3013940,3014200-3014284,
3014369-3014387,3014563-3014667
Length = 281
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 363 CW*HSWSQICGGSRSKRVA 419
CW SWSQ+CG VA
Sbjct: 240 CWNPSWSQLCGSINRMFVA 258
>06_02_0330 - 14492988-14493299
Length = 103
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 334 VAGFGRKGHAVGDIPGVRFAV 396
VAG GR+GHA + G R AV
Sbjct: 80 VAGHGRRGHAKVETEGTRCAV 100
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 82 REQRWADKEFKKAHMGTRWKANPFGG 159
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHL 166
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 88 QRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 267
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 268 KVTAFVPR 291
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 137 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 48
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 156 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 28
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,633
Number of Sequences: 37544
Number of extensions: 330528
Number of successful extensions: 942
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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