Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H06
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-5|CAB60448.2|  345|Caenorhabditis elegans Hypothetical ...    26   3.2  
U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine rec...    25   5.5  
AF078787-3|AAC26951.1|  335|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    25   5.5  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AL117206-5|CAB60448.2|  345|Caenorhabditis elegans Hypothetical
           protein Y67A10A.7 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 154 YNNIANHFLEIFHNIN*TIYIS 89
           Y  IA H L+ FHN + T+Y S
Sbjct: 272 YERIAEHNLDPFHNPSHTLYFS 293


>U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 11 protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 61  HSALLCLYQMIYILFS*YYGRFRESDLLYYY 153
           + A+ C Y    IL+S +  RF+E  +   Y
Sbjct: 63  YGAIACSYMAFCILYSYFTDRFKEQQVFIVY 93


>AF078787-3|AAC26951.1|  335|Caenorhabditis elegans Hypothetical
           protein T17A3.4 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 154 YNNIANHFLEIFHNIN-*TIYISFD 83
           +  IANH LEIFH     T+ IS D
Sbjct: 117 FKEIANHVLEIFHKSEFSTLMISHD 141


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 57  VTQCLIVPLSNDIYIV*LILWKISRK 134
           + Q  I PL   +    LILW+ISRK
Sbjct: 194 IIQVYIAPLFVTVVCYSLILWRISRK 219


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 46  VLTS*HSALLCLYQMIYILFS 108
           ++++ H  +LC ++MI++LFS
Sbjct: 239 LISNTHLLILCTHKMIFLLFS 259


>AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical
           protein T17A3.3 protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 154 YNNIANHFLEIFH 116
           +  IANH LEIFH
Sbjct: 118 FKEIANHVLEIFH 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,017
Number of Sequences: 27780
Number of extensions: 43427
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)