Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H05
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   169   1e-43
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   169   1e-43
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   2.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   3.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   4.6  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   6.1  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  169 bits (412), Expect = 1e-43
 Identities = 75/123 (60%), Positives = 96/123 (78%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKE 211
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+  E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 392 IKV 400
           +KV
Sbjct: 123 LKV 125


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  169 bits (412), Expect = 1e-43
 Identities = 75/123 (60%), Positives = 96/123 (78%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKE 211
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+  E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 392 IKV 400
           +KV
Sbjct: 123 LKV 125


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 2   HEAKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 151
           HE +M A    +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 460 HERQM-ADTCYQEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 182 TTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYR 298
           T+G  +S+   P       K++ I  R  S SGVH++ R
Sbjct: 458 TSGASISNTSSPHSEASISKDYEILKRRRSNSGVHSLTR 496


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 119 DPIVAKSRFWYFLRQLKKFK 178
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 86  PPLYKMRIFSPDPIVAKSRFWYFL 157
           PP     +  P  +  K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 177 LNFFNCLKKYQKRDF 133
           +N   C+KKY  RDF
Sbjct: 111 INLIECMKKYNVRDF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,504
Number of Sequences: 5004
Number of extensions: 31434
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)