Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H05
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 155 1e-38
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 153 7e-38
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 132 1e-31
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.27
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 28 2.5
06_01_0637 + 4635136-4635969 28 3.3
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 27 4.4
04_01_0014 - 231228-233179,233522-233714 27 4.4
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 27 7.7
02_02_0545 - 11376016-11378307 27 7.7
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 155 bits (376), Expect = 1e-38
Identities = 65/124 (52%), Positives = 95/124 (76%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKEIP 217
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++ EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVI 409
+
Sbjct: 128 TATV 131
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 153 bits (370), Expect = 7e-38
Identities = 63/124 (50%), Positives = 94/124 (75%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKEIP 217
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++ EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVI 409
+
Sbjct: 128 TATV 131
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 132 bits (318), Expect = 1e-31
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 17/141 (12%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 166
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 167 KKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 346
KK KK+ G++++ EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 347 DMGARHRARAHSIQIIKVEVI 409
+M +RHR R IQIIK +
Sbjct: 128 EMASRHRVRFPCIQIIKTATV 148
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 313 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLAGYNFTSSLFELLQLPQEIPE 143
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 125 IVAKSRFWYFLRQLKKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVH 286
+V K LR+L + E+V +E+PE P+K ++ + LR +R H
Sbjct: 353 LVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALR-NTRPSAH 405
>06_01_0637 + 4635136-4635969
Length = 277
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 117 GEKILILYRGGFGSLSEGSLRPMTSYSFNSPFAFILAS 4
G IL LY G F + +G P+T YS P A AS
Sbjct: 202 GLTILELYTGSFPLVEQGQSIPLTCYSDGPPEAPATAS 239
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 27.5 bits (58), Expect = 4.4
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKM--RIFSPDPIVAKSRFWYFLRQLKKFKKTT 187
M A+G K GR +E E + L+ I + + I + ++ +K +
Sbjct: 1 MAARGSKKRKIAEGRTHWTEEELRVFLHSCLEEIQARNIISSSPEAQGYINLERKMLERA 60
Query: 188 GEIVSSKEIPEKSPVKIKNFGIWLRYESRS 277
G+ V+ K++ + KNFG+W ES++
Sbjct: 61 GKRVTKKQVKWRWAKSRKNFGMWTWLESKA 90
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 153 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 46
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 259 QPDTKVLNLNRTLFWNFLAGYNFTSSLFELLQLPQEIPETRF 134
Q +T ++NL RT++ ++ +F + +LL++ E + F
Sbjct: 521 QTETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQESF 562
>02_02_0545 - 11376016-11378307
Length = 763
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = +3
Query: 198 YPARKFQKRVLLRLRTLVSGCVTSLALVSTICXXXXXXXXXXXQSLSAIEIWELDTELVH 377
Y R + VLL LR + GC + ++ + +S + L T+L+
Sbjct: 635 YTTRTIAEAVLLELRVCLRGCASDKEVLDRLKAVAETATASSPESGIHVHGARLWTQLMV 694
Query: 378 IQYRSSKWK 404
I + WK
Sbjct: 695 IPDQEMTWK 703
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,026
Number of Sequences: 37544
Number of extensions: 194553
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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