Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H05
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   185   1e-47
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    29   0.99 
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   2.3  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    28   3.0  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   4.0  
AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.      27   4.0  
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    27   4.0  
AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast m...    27   4.0  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    27   7.0  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  185 bits (451), Expect = 1e-47
 Identities = 80/133 (60%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
 Frame = +2

Query: 17  KAKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
           KA GE L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 194 IVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
           I+S K++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 374 AHSIQIIKVEVIK 412
           A  I I+KV+ +K
Sbjct: 124 ADRIHILKVQTVK 136


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 225  LFSGISLL-DTISPVVFLNFFNCLKKYQKRDFATIGSGEKILI 100
            L S +SLL   + P + L+FF   K+Y   D  T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 188 GEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 325
           G I+ +  +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 167 KKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVG 322
           KKF   TGE +    + EK     K   +W      S VH ++ ++ +L+VG
Sbjct: 506 KKFSSYTGESLEGHALVEKIMAHAKTGILWFFDNYNSSVHFIFDDF-ELNVG 556


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 5   EAKMKAKGELKEYEVIGRKLPSESEPK-PPLYKMRIFSPDPIVAKSRFWY 151
           E  +   G  +E  ++    PS S P  PP Y+ +      IV  S FW+
Sbjct: 66  EEDLNLPGTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 170 KFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 331
           K KK         E   K   +I N   W+R+    G+  + +EY+D   GG++
Sbjct: 235 KLKKKKSVTCDEAEFSGKKKKEIIN--AWIRHVLSIGIEGLKKEYQDSPNGGSI 286


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 158 RQLKKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYRE-YRDLSVG 322
           + ++KF+K   +++   ++P   P  +++FG      S SG  +M    Y DL +G
Sbjct: 433 KNIEKFRKKPAQVIKGNDLPNLPPGGMRSFGF-----SLSGGSDMDENGYPDLLIG 483


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 5   EAKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFK-K 181
           EA ++ K    +  V   ++PS +EP  P+  +    P  +  KSR+      LK  K K
Sbjct: 673 EAPLQVKTSSSDPIVTSTEVPSVAEPPAPIQNVEEAKP-IVPVKSRYAKAKPNLKPIKQK 731

Query: 182 TTGEIVSSKEIPEKSP 229
           T  ++V+  E     P
Sbjct: 732 TAVDVVTVGEGESSEP 747


>AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform a
           protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSSKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 20  AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSR 142
           AKG +K    IG+K+  E  PK P  + + F+      KS+
Sbjct: 146 AKGTIKRSAPIGKKVQKEKVPKNPKKEKKDFTGGDKKKKSK 186


>Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical
           protein K08H2.5 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 194 IVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 316
           ++ +K I   SP K+ ++G+  ++ +R G +   R  RD++
Sbjct: 156 VLFAKTITPASPCKLIDYGVGKKFRNRRGNYVKNRPQRDVN 196


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +2

Query: 230 VKIKNFGIWLRYESR---SGVHNMYR 298
           V +K+FGI LRY S+   S VH  Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 292 HIVDTRARLVTQPDTKVLNLNRTLFWNFLAGYNFTSSLFELLQLPQEIPE 143
           HI+    +L+  P T  L   +  F     G   T     LL++P EI E
Sbjct: 288 HILSPYGKLLESPSTATLRFRKIPFLKVEYGIQVTLGTDILLEIPIEIGE 337


>U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical
           protein F53E10.5 protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 65  PSESEPKPPLYKMRIFSPDPI 127
           P+E +P+PP Y +    PDP+
Sbjct: 69  PTEIDPRPPSYTVNENHPDPM 89


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   EAKMKAKGELKEYEVIGRKLPSESEPKP 88
           EAK KA  ++KE E   ++ P+ES P P
Sbjct: 422 EAKKKAVEKVKEKEKKEQRKPNESGPAP 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,060
Number of Sequences: 27780
Number of extensions: 177624
Number of successful extensions: 617
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)