Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H03
         (246 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   1.2  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   2.8  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    25   6.4  
11_01_0479 - 3695245-3696588,3696705-3696965                           25   8.5  
08_02_0643 + 19648114-19648612,19648690-19648787                       25   8.5  

>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 143 VIIALYNFSAFACPT*SICVGMDEKKSI 60
           +++ L+N SA  C   S+C+GM   K++
Sbjct: 55  ILVLLFNLSAILCQYLSMCIGMVTGKNL 82


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +3

Query: 21  CGFCNSAFSLLNDNGFFFIH--TYTY*LCWTSKG*KIIQSDNHIIQYSWFHLGLYCSTVF 194
           C F N++   L  N   +    T ++ +C ++      +S+N        HL L CS +F
Sbjct: 550 CFFQNTSAVFLEGNKKLYSKSSTVSFPICGSTSD--STKSNNEASLTKKIHLPLQCSDLF 607

Query: 195 TICIYPWSWMS 227
             C Y  +W S
Sbjct: 608 KRCNYVLNWCS 618


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 142 TLFSIVGFIWGYIVQQFSQSVYILGAGCLLAAVL 243
           +L   + FIW  ++++  Q  + +  GC+ AA+L
Sbjct: 325 SLLDTMEFIWRCVLRKQLQKGFAIVLGCMSAAIL 358


>11_01_0479 - 3695245-3696588,3696705-3696965
          Length = 534

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 15  CCCGFCNSAFSLLNDNGFFFIHTYT 89
           CCCG   +     N +G F I T+T
Sbjct: 279 CCCGSPGATTLCHNSSGAFVIKTWT 303


>08_02_0643 + 19648114-19648612,19648690-19648787
          Length = 198

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 18  CCGFCNSAFSLLNDNG 65
           CCG C SA+ ++   G
Sbjct: 108 CCGMCGSAYDIVRGGG 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,295,234
Number of Sequences: 37544
Number of extensions: 104004
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)