Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H03
         (246 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    64   1e-10
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    62   2e-10
BC093097-1|AAH93097.1|  238|Homo sapiens IGKC protein protein.         28   4.8  
AB011099-1|BAA25453.1|  768|Homo sapiens KIAA0527 protein protein.     28   6.3  

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/63 (42%), Positives = 44/63 (69%)
 Frame = +1

Query: 58  IMDFFSSIPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGCLLAA 237
           +++  SS+PT +DY GQ  AE++++ I    +IVGFI+GY+ +QF  +VYI+ AG   + 
Sbjct: 1   MLEHLSSLPTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSC 60

Query: 238 VLT 246
           +LT
Sbjct: 61  LLT 63


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/55 (47%), Positives = 41/55 (74%)
 Frame = +1

Query: 58  IMDFFSSIPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAG 222
           +++  SS+PT +DY GQ  AE++++ II   +IVGFI+GY+ +QF  +VYI+ AG
Sbjct: 1   MLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAG 55


>BC093097-1|AAH93097.1|  238|Homo sapiens IGKC protein protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 30 CNSAFSLLNDNGFFFIHTY 86
          C S+ SLL+ NGF ++H Y
Sbjct: 43 CRSSRSLLHSNGFIYLHWY 61


>AB011099-1|BAA25453.1|  768|Homo sapiens KIAA0527 protein protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 IITLFSIVGFIWGYIVQQFSQSVYILGAG 222
           ++ L + VG +WGY   Q   SVY L  G
Sbjct: 724 LLLLLAGVGMVWGYRKCQHKSSVYKLNVG 752


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,055,026
Number of Sequences: 237096
Number of extensions: 676776
Number of successful extensions: 5187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5187
length of database: 76,859,062
effective HSP length: 59
effective length of database: 62,870,398
effective search space used: 1383148756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)