Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H03
(246 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043693-5|AAB97532.1| 105|Caenorhabditis elegans Hypothetical ... 50 3e-07
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z82287-2|CAB05312.1| 502|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 26 4.1
U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical p... 26 4.1
Z81558-1|CAB04539.1| 318|Caenorhabditis elegans Hypothetical pr... 25 5.4
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 25 5.4
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 25 5.4
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 25 5.4
U49829-5|AAK68351.1| 564|Caenorhabditis elegans Hypothetical pr... 25 9.4
AC026301-11|AAK68891.2| 273|Caenorhabditis elegans Hypothetical... 25 9.4
>AF043693-5|AAB97532.1| 105|Caenorhabditis elegans Hypothetical
protein C34B2.10 protein.
Length = 105
Score = 49.6 bits (113), Expect = 3e-07
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 IPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY-ILGAGCLLAAVL 243
+ +HID+ GQ AE+ Y+ I+T+ I+GF+ G+ QQ S +++ +LGA A ++
Sbjct: 15 LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALII 70
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 151 SIVGFIWGYIVQQFSQSVYILGAGCLLAAV 240
+I+GFI+ YIV+ + +++LG G LL V
Sbjct: 388 NIIGFIF-YIVKWLFKHLFLLGLGALLTYV 416
>Z82287-2|CAB05312.1| 502|Caenorhabditis elegans Hypothetical
protein ZK550.2 protein.
Length = 502
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 AIITLFSIVGF-IWGYIVQQFSQSVYILGAGCLLAAVL 243
A T GF IW + ++ + Y++ C+LAAVL
Sbjct: 188 AFFTPLGETGFNIWIVKINMYTSAAYLMAFICVLAAVL 225
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 38 SIFFAKR*WIFFHPYLHILTMLDKQRLKNYTER*SH 145
SIF K FF Y +L LD + +NY R H
Sbjct: 91 SIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMCH 126
>U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical
protein F45F2.1 protein.
Length = 475
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +3
Query: 123 IIQSDNHIIQYSWFHLGLYCSTVFTICIYPWSWMSTC 233
+ S +H +++ + + +Y TI + W W S C
Sbjct: 53 VFVSISHRVEFHYHRMIVYFGLSHTIAVNLWIWASLC 89
>Z81558-1|CAB04539.1| 318|Caenorhabditis elegans Hypothetical
protein F59D12.1 protein.
Length = 318
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +3
Query: 126 IQSDNHIIQYS--WFHLGLYCSTVFT---ICIYPWSWM 224
I DN II S + + L+CSTV+T ICI +S M
Sbjct: 82 IGGDNSIICKSAAYLQIALFCSTVYTFAWICIDRYSAM 119
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 106 VQHSQYV*VWMKKNPLSFSKENAELQ 29
++ QY +W+ KN L F ++ +Q
Sbjct: 1432 IEKKQYNIIWLNKNTLKFDSDDVTVQ 1457
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 106 VQHSQYV*VWMKKNPLSFSKENAELQ 29
++ QY +W+ KN L F ++ +Q
Sbjct: 1432 IEKKQYNIIWLNKNTLKFDSDDVTVQ 1457
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 106 VQHSQYV*VWMKKNPLSFSKENAELQ 29
++ QY +W+ KN L F ++ +Q
Sbjct: 1432 IEKKQYNIIWLNKNTLKFDSDDVTVQ 1457
>U49829-5|AAK68351.1| 564|Caenorhabditis elegans Hypothetical
protein F27D9.7 protein.
Length = 564
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 62 WIFFHPYLHILTMLDKQRLK 121
W+F H H++ + KQ+ K
Sbjct: 60 WVFMHQLAHVIGLTHKQQTK 79
>AC026301-11|AAK68891.2| 273|Caenorhabditis elegans Hypothetical
protein Y54F10BM.12 protein.
Length = 273
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 67 FFSSIPTHIDYVGQAKAEKLYRAIITL 147
F + P H+ Y+ Q + KL+R +++
Sbjct: 67 FMTGYPIHMSYITQTEIAKLFRKKLSI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,919
Number of Sequences: 27780
Number of extensions: 108604
Number of successful extensions: 293
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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