Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H03
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   5.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   9.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    19   9.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   9.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = +1

Query: 85  THIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY 207
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 150


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = +1

Query: 85  THIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY 207
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 240


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 73  SSIPTHIDYVGQA 111
           +S+PT+I Y+G+A
Sbjct: 652 TSMPTYICYLGKA 664



 Score = 19.4 bits (38), Expect = 6.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 109 AKAEKLYRA 135
           AK EKLYRA
Sbjct: 30  AKLEKLYRA 38


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 3   TRKICCCGFC 32
           T+  CC G+C
Sbjct: 454 TKTFCCKGYC 463


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 189 VFTICIYPWSWM 224
           VF  CI+ W+++
Sbjct: 219 VFVTCIFIWAYV 230


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +1

Query: 73  SSIPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFS 195
           +S+P  +D     +   ++ AI  +   V    GY+ ++ S
Sbjct: 56  ASLPIDVDVYNTEQQSTVFVAIPRIQDGVPLTLGYVTREVS 96


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 67  NPLSFSKENAELQKPQQQI 11
           NP+ ++  N + +KP ++I
Sbjct: 423 NPIIYATLNRDFRKPFREI 441


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 189 VFTICIYPWSWM 224
           VF  CI+ W+++
Sbjct: 219 VFVTCIFIWAYV 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,796
Number of Sequences: 438
Number of extensions: 1351
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)