Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H01
         (199 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3JFR5 Cluster: Methyltransferase CmcJ; n=16; Proteobac...    34   0.70 
UniRef50_A2E4F4 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  

>UniRef50_Q3JFR5 Cluster: Methyltransferase CmcJ; n=16;
           Proteobacteria|Rep: Methyltransferase CmcJ -
           Burkholderia pseudomallei (strain 1710b)
          Length = 289

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 41  LVPRDYLTRSAIGVTYVLVSL---KWQNYVKLNPNEVLLLKCY 160
           LVP D + R  +G TY +V+    +W  + +L  +EVLLLK Y
Sbjct: 201 LVPSDLVYRDKVGETYSVVANPAHRWFYFPRLRADEVLLLKIY 243


>UniRef50_A2E4F4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 4242

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 134 SDLISHNFAILMKLKRMSHQLRFSLNSHGELITKLKGEIRS 12
           S+ +S N  ++ K+   +  L  +L SH  L+TKL  EI+S
Sbjct: 870 SNFVSSNSDVIAKMGFNTKDLMKTLASHSTLVTKLASEIKS 910


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,438,797
Number of Sequences: 1657284
Number of extensions: 2158090
Number of successful extensions: 5954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5954
length of database: 575,637,011
effective HSP length: 45
effective length of database: 501,059,231
effective search space used: 10021184620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)