Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H01
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    25   1.0  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    24   2.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    23   4.2  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       23   5.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   5.6  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    23   5.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    23   7.4  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    23   7.4  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.4  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    23   7.4  

>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 143 TLRSDLISHNFAILMKLKRMSHQLRFSLNSHGELITKLKGEI 18
           TL SD  SH    +   K  S  L  SLNS   L+ +  G+I
Sbjct: 173 TLSSDYFSHPITSVKTSKSASFSLISSLNSSIHLLDQETGKI 214


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 53  DYLTRSAIGVTYVLVSLKWQNYVKLNPN 136
           DY+   AI   +  V  ++ NY+K N N
Sbjct: 3   DYIKDKAIAADFSSVQFRFDNYLKQNFN 30


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 95   LKRMSHQLRFSLNSHGELITKLKGE-IRSE 9
            LK  +HQL+ S +S  E ITK + E ++SE
Sbjct: 1463 LKDSNHQLQESASSDAEQITKEQFEQLKSE 1492


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  SLKWQNYVKLNPNEVLLL 151
           SL+WQ + KLN   ++ L
Sbjct: 58  SLQWQTWAKLNDPSIVFL 75


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 KSERSVIIEMLQAYKDFPCLLG 192
           K+  S++   + A K FPCL+G
Sbjct: 527 KNATSLLALYINALKVFPCLMG 548


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 196 YIPINMENPYKLVTFQ**HFVRI*FHIILPF 104
           Y  +N+EN  + +T+   HF     H+ +PF
Sbjct: 75  YTNVNLENLNRNITYNLQHFYEGYKHVDVPF 105


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 128 NPNEVLLLKCYKLIRIFHVYWDVS 199
           NPNE+L+      + +FHV+ D S
Sbjct: 277 NPNELLVSWNSDYVYLFHVHEDKS 300


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 68  FSLNSHGELITKLKGE 21
           F LN HGEL+ +++ E
Sbjct: 906 FDLNPHGELLLRIEME 921


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 131 DLISHNFAILMKLKRMSHQ 75
           DL+ H+F  L ++ + +HQ
Sbjct: 261 DLLDHHFCDLSEISKFNHQ 279


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 119 VKLNPNEVLLLKCYKLIRIFH 181
           V + P+ +LLL  Y  I IFH
Sbjct: 640 VSIKPDVILLLDTYFHILIFH 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,721
Number of Sequences: 5004
Number of extensions: 10088
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)