Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G24
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0264 + 23675171-23676541                                         26   3.7  
12_02_0058 + 13015401-13016654                                         26   4.8  
09_06_0012 - 20221635-20221954,20221988-20222064,20222580-202226...    25   6.4  
12_02_0089 + 13488932-13489915                                         25   8.4  
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462...    25   8.4  
01_05_0535 - 23001864-23005052                                         25   8.4  

>05_05_0264 + 23675171-23676541
          Length = 456

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 77 NNSNSAVVSRQQTPPPPRLVPNSCS 3
          + S S+  ++   PPPPRL P   S
Sbjct: 10 SRSTSSAAAQPSPPPPPRLAPAPAS 34


>12_02_0058 + 13015401-13016654
          Length = 417

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 59  VVSRQQTPPPPRLVP 15
           VV++Q  PPPP LVP
Sbjct: 192 VVTQQAPPPPPPLVP 206


>09_06_0012 -
           20221635-20221954,20221988-20222064,20222580-20222698,
           20223244-20223558
          Length = 276

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   GLHEFGTRRGGGGVCCLLTTAEL 69
           G  EF   +GGGGVC  +++  L
Sbjct: 103 GTKEFWLDKGGGGVCMTISSRAL 125


>12_02_0089 + 13488932-13489915
          Length = 327

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 22 RRGGGGVCC 48
          RRGGGG CC
Sbjct: 73 RRGGGGACC 81


>03_06_0467 +
           34145126-34145187,34145403-34145759,34146161-34146248,
           34146361-34146506,34146892-34146936,34147030-34147133,
           34147225-34147361,34147651-34147761,34148455-34148664
          Length = 419

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 65  SAVVSRQQTPPPPRLVPN 12
           S +V+RQ  PPPP   P+
Sbjct: 68  SGIVTRQLLPPPPPAAPS 85


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 77 NNSNSAVVSRQQTPPPPRLVP 15
          ++S+SA  +    PPPPR +P
Sbjct: 18 SSSSSAAAAASPPPPPPRRLP 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,448
Number of Sequences: 37544
Number of extensions: 41565
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 7
effective length of database: 14,530,540
effective search space used: 261549720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)