Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G22
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0806 + 24788441-24789049                                         27   1.6  
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           26   4.9  

>06_03_0806 + 24788441-24789049
          Length = 202

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +1

Query: 52  CWVLWYILTIVFYI*IYLL--YTLFCILSL 135
           C++  Y+L+I++Y+ IYLL  Y    +LS+
Sbjct: 162 CYISIYLLSIIYYLSIYLLSIYLSIYLLSI 191


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 112 YTTNRSIYRIR*LKCTTKPSTVTFNYNNSHTQV 14
           Y+ N+SI+    L C+ KP  V  +YN   TQ+
Sbjct: 176 YSDNKSIFNNLSL-CSYKPMQVWVDYNEDTTQI 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,273,845
Number of Sequences: 37544
Number of extensions: 61283
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)