Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G22
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    27   1.3  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    27   1.3  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    27   1.3  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    25   5.4  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    25   5.4  
AL032626-7|CAA21544.1|   79|Caenorhabditis elegans Hypothetical ...    25   7.1  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 65  GTF*LSYS--IYRSICCILYFV--FCHCISAKIPACGDASH 175
           G F L +S  I  S+C  + FV   C C+ + IP  G +SH
Sbjct: 231 GVFVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 271


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 65  GTF*LSYS--IYRSICCILYFV--FCHCISAKIPACGDASH 175
           G F L +S  I  S+C  + FV   C C+ + IP  G +SH
Sbjct: 237 GVFVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 277


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 65  GTF*LSYS--IYRSICCILYFV--FCHCISAKIPACGDASH 175
           G F L +S  I  S+C  + FV   C C+ + IP  G +SH
Sbjct: 237 GVFVLLFSATIILSLCGFIMFVCCLCKCLKSTIPIKGASSH 277


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 86  SIYRSICCILYFVFCHCISAKI 151
           SI   +CCIL+ VFC   ++K+
Sbjct: 4   SILILLCCILFVVFCKEKASKV 25


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 64  WYILTIVFYI*IYLLYTLFCILSLY*C*DSR 156
           W   TI+  I  +L   L C L+L+ C  SR
Sbjct: 364 WRTATIILAILTFLFLLLLCALALFTCVRSR 394


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 67  TTKPSTVTFNYNNSHTQVITLV 2
           TT PST + +YNN H   I ++
Sbjct: 462 TTAPSTSSSSYNNHHQNSIVMM 483


>AL032626-7|CAA21544.1|   79|Caenorhabditis elegans Hypothetical
           protein Y37D8A.8 protein.
          Length = 79

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 64  WYILTIVFYI*IYLLYTLFCI 126
           W I+ ++ ++  +L+Y L CI
Sbjct: 37  WLIIILIIFVAFFLIYILCCI 57


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 67  TTKPSTVTFNYNNSHTQV 14
           +T PST T +YNN+++ +
Sbjct: 691 STSPSTFTVSYNNTNSSI 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,709
Number of Sequences: 27780
Number of extensions: 61978
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)