Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G21
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    24   3.2  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    23   7.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    22   9.9  

>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 207 HVTSRYVSHIKSICTNIPLI 148
           +V+++++  I ++C N+P I
Sbjct: 97  NVSTKWIEEINTLCPNVPFI 116


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 135 FKRLHFYTVHFIH*LYYLIMSLL 67
           F ++ FY + F   LY ++MSL+
Sbjct: 116 FIKVTFYLIMFFTLLYCMVMSLI 138


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 5    EGLQDIPSRYVHVRHSHLLVTNNDII 82
            + L+ I  RY HV     ++ NND +
Sbjct: 943  DSLKPILERYTHVADVGGMIRNNDFL 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,727
Number of Sequences: 5004
Number of extensions: 13056
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)