Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G21
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    28   1.2  
03_03_0110 - 14523712-14525183,14525482-14525749                       27   2.1  

>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 237 CVTSLHFTSRHVTSRYVSHIKSICTNIPLI 148
           C+T LH T+  +   ++ HI ++CT + ++
Sbjct: 177 CLTKLHLTNVSLHECFMEHITTVCTLLEVL 206


>03_03_0110 - 14523712-14525183,14525482-14525749
          Length = 579

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 231 TSLHFTSRHVTSRYVSHI 178
           T LH  +RHV +RYV+H+
Sbjct: 456 TVLHAKTRHVLARYVAHL 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,793,545
Number of Sequences: 37544
Number of extensions: 65028
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)