Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G21
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    28   0.77 
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear recep...    26   4.1  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    26   4.1  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    25   7.1  

>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 154 LNLNENF*TPTFLYSTFYSLTLLFNYVV 71
           LNL+  F  PTF Y+TF+ + ++  YV+
Sbjct: 202 LNLSNEF--PTFRYATFHFIFIVLTYVI 227


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 207 HVTSRYVSHIKSICTNIPLI*MKTFKRLHFYTVHFIH 97
           H+T      IKSI  N P    K  +R+H    H IH
Sbjct: 542 HLTREEWEWIKSIDMNEPFFATKAQERIHSDIAHAIH 578


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 207 HVTSRYVSHIKSICTNIPLI*MKTFKRLHFYTVHFIH 97
           H+T      IKSI  N P    K  +R+H    H IH
Sbjct: 678 HLTREEWEWIKSIDMNEPFFATKAQERIHSDIAHAIH 714


>AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear receptor
            NHR-109 protein.
          Length = 364

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 120 FYTVHFIH*LYYLIMSLLVTN-KCECRTC 37
           F  +++IH     I+ LL+ N +C CR C
Sbjct: 37  FQKINYIHVAEITIVMLLLVNIRCMCRAC 65


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 172 YMY*HSLNLNENF*TPTFLYSTFYSLTLLFNYVVIS 65
           Y++ HS NL E +  P F+  +     LL  Y +IS
Sbjct: 9   YVFTHSFNLPEEYACPDFMTKSSRKQPLLGAYFLIS 44


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 240 ECVTSLHFTSRHVTSRYVSHIK 175
           EC+ ++HFT+  +TS  V+ +K
Sbjct: 242 ECLPAIHFTAAPITSDEVNLVK 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,554,378
Number of Sequences: 27780
Number of extensions: 71942
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)