Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G21
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   0.41 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   0.41 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   5.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   6.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   6.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 240 ECVTSLHFTSRHVTSRYVSHI 178
           E + S  FT+RH  + Y+SH+
Sbjct: 303 ETIISSVFTTRHNATCYLSHV 323


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 240 ECVTSLHFTSRHVTSRYVSHI 178
           E + S  FT+RH  + Y+SH+
Sbjct: 9   ETIISSVFTTRHNATCYLSHV 29


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -3

Query: 226 TSLHFTSRHVTLRLSYKEYMY*HSLNLNEN 137
           TS   + +H+ + +  K+ ++ H+++ NE+
Sbjct: 394 TSTTISQKHIKVFVVNKDILHEHNVDDNED 423


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 54  CECRTC 37
           CEC+TC
Sbjct: 435 CECKTC 440


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 178 KEYMY*HSLNLNENF 134
           +EY+Y H L LN  +
Sbjct: 257 EEYLYSHKLLLNRYY 271


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 178 KEYMY*HSLNLNENF 134
           +EY+Y H L LN  +
Sbjct: 257 EEYLYSHKLLLNRYY 271


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 211 TSRHVTLRLSYKEYMY*HSLNLNE 140
           TSRH TL L  K   +  SL   E
Sbjct: 81  TSRHTTLGLLTKAKRFIKSLEERE 104


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 11  LQDIPSRYVH 40
           L++ P+RY+H
Sbjct: 453 LKNFPTRYIH 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,230
Number of Sequences: 438
Number of extensions: 851
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)