Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G20
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   177   7e-46
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   176   1e-45
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   8.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   8.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  177 bits (430), Expect = 7e-46
 Identities = 80/111 (72%), Positives = 93/111 (83%)
 Frame = +1

Query: 79  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
           ++ ARP VS+YS K   V+  ++ LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRK 110


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  176 bits (429), Expect = 1e-45
 Identities = 80/111 (72%), Positives = 93/111 (83%)
 Frame = +1

Query: 79  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
           ++ ARP VS+Y+ K   V+  +L LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRK 110


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 197 SLTRSGLMGALNTNGRGSEAPATTSLF 117
           S T SGL GA NTN +   +   T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 377  PPRHMLPNAPCPDLWVPPP 321
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 377  PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
            PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224



 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = -1

Query: 395  VGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
            VG    PP    P  P P   +PP      +A   P P   A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 143 EAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKH 36
           ++ A  S F EY +    +++ L SL  +SYSS  +
Sbjct: 650 DSNADESQFLEYANDSPNSSESLESLNNQSYSSSPY 685


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 200 TSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLIS 69
           +SLT S  + + +TN   S +P ++SL S    +   A+    S
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,756
Number of Sequences: 5004
Number of extensions: 28250
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)