Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G20
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 161 2e-40
07_01_0578 + 4295386-4296489,4297394-4297507 160 5e-40
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.022
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.039
03_05_0366 - 23505755-23506441 31 0.36
11_01_0338 + 2522698-2523213 31 0.48
07_03_1721 - 29023979-29025295 29 1.1
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 29 1.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 1.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 2.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 28 3.4
03_01_0092 - 731069-731434,731569-733080 28 3.4
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 4.5
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 4.5
03_02_0769 + 11029923-11030172,11030442-11030569,11030892-110311... 27 5.9
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 27 7.8
10_06_0151 + 11276554-11276916,11277020-11277403 27 7.8
09_02_0384 - 8294914-8297817 27 7.8
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 7.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 161 bits (392), Expect = 2e-40
Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Frame = +1
Query: 82 SVARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
+ ARPLVSV + + ++ A + +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRR
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRR 113
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 160 bits (388), Expect = 5e-40
Identities = 75/109 (68%), Positives = 88/109 (80%), Gaps = 2/109 (1%)
Frame = +1
Query: 91 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 264
RPLVSV + + ++ +SL L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 265 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRK 114
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.022
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 211 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.039
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 377 PPRHMLPNAPCPDLWVPPP 321
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.36
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 157 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 333
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 334 HRSGQGA 354
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 308 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 138
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 404 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 285
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 139 ASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSK--EAGHQT 267
ASL +P F+ PI DL+ D + + + C+ + EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 166 KAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 279
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 160 VFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 330
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 331 T 333
T
Sbjct: 215 T 215
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 374 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 282
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 413 QRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRA 300
+ LHG A RPP L AP P PP G+ A
Sbjct: 44 EALHGAAAATARPPPVSL--APAPVAVAPPATPAGLSA 79
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 250 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 408
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 329 PPPRTRGIRATARPVPQDSA 270
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>03_02_0769 +
11029923-11030172,11030442-11030569,11030892-11031137,
11031302-11031557,11031665-11031888
Length = 367
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 127 VVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVAR 306
VVAG +P FVF + N+ VS+SK P + + GHQ + + GR +
Sbjct: 24 VVAGGGMPATFVFGDSLVDAGNNNYLVSLSKANYPPNGIDFD-GHQPTGR-YTNGRTIVD 81
Query: 307 I 309
I
Sbjct: 82 I 82
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 322 GGGTHRSGQGAFGNMCRGGRMFAPTKP 402
GGG +G GA RGG AP +P
Sbjct: 49 GGGGGGAGAGAARRRARGGARAAPARP 75
>10_06_0151 + 11276554-11276916,11277020-11277403
Length = 248
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 206 TWTSLTRSGLMGALNTNGRGSEAPATT---SLFSEYTDTKGRATDRLI 72
TWTS+ G G +NG G+ A + + S +E+TDT A DR +
Sbjct: 11 TWTSVPGEGGGGGGRSNGGGTAAESDSRELSFDAEHTDT---ALDRYV 55
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 97 LVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSK 219
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 181 PDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIP 312
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,839
Number of Sequences: 37544
Number of extensions: 272388
Number of successful extensions: 1178
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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