Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G19
(410 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 166 1e-40
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 165 3e-40
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 123 1e-27
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 116 2e-25
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 106 2e-22
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 101 8e-21
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 99 4e-20
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 96 3e-19
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 93 2e-18
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 90 2e-17
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 80 2e-14
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 76 3e-13
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 75 4e-13
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 64 1e-09
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 62 4e-09
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 60 1e-08
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 59 3e-08
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 53 3e-06
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 47 1e-04
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 44 0.001
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 44 0.002
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 44 0.002
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 42 0.006
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 40 0.026
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 38 0.060
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 36 0.24
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 36 0.42
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 35 0.56
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 35 0.56
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 34 1.3
UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus... 33 1.7
UniRef50_Q00U98 Cluster: Chromosome 16 contig 1, DNA sequence; n... 33 3.0
UniRef50_Q4D9C8 Cluster: Putative uncharacterized protein; n=1; ... 32 4.0
UniRef50_A1ZBM9 Cluster: CG15904-PA; n=2; Sophophora|Rep: CG1590... 32 5.2
UniRef50_Q6FNX0 Cluster: DNA damage checkpoint protein LCD1; n=1... 32 5.2
UniRef50_Q21148 Cluster: Putative uncharacterized protein; n=2; ... 31 6.9
UniRef50_UPI0000DC0F75 Cluster: UPI0000DC0F75 related cluster; n... 31 9.1
UniRef50_Q21DT8 Cluster: ABC-1; n=1; Saccharophagus degradans 2-... 31 9.1
UniRef50_Q090W0 Cluster: Gp248; n=3; Cystobacterineae|Rep: Gp248... 31 9.1
UniRef50_A7PP68 Cluster: Chromosome chr8 scaffold_23, whole geno... 31 9.1
UniRef50_A0CUU7 Cluster: Chromosome undetermined scaffold_284, w... 31 9.1
UniRef50_Q6LTM2 Cluster: Chemotaxis response regulator protein-g... 31 9.1
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 166 bits (404), Expect = 1e-40
Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 5/136 (3%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG++LRVFCIGFT KD++SQRKTCYAQH+Q++ IR KM II R++TS++L+ VV KL+P
Sbjct: 134 DGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLP 193
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKS--- 361
DSIAKDIEKAC +YPL DV IRKVKVLK+PRF++S LM +
Sbjct: 194 DSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGV 253
Query: 362 --ERPEGYEPPVQESV 403
+RPEGYEPPVQ SV
Sbjct: 254 VVDRPEGYEPPVQASV 269
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 165 bits (401), Expect = 3e-40
Identities = 81/134 (60%), Positives = 97/134 (72%), Gaps = 3/134 (2%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY+LR+FC+GFT K RKT YAQH QVR IRKKM EI+TR+V +++L+EVVNKLIP
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD---KS 361
DSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLM + K
Sbjct: 191 DSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKV 250
Query: 362 ERPEGYEPPVQESV 403
ER +GYEPPVQESV
Sbjct: 251 ERADGYEPPVQESV 264
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 123 bits (297), Expect = 1e-27
Identities = 56/99 (56%), Positives = 74/99 (74%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
D Y LR+FCI FT K +KTCYAQ +Q+R IR+KM EI+T TS +L+E+V K IP
Sbjct: 526 DNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIP 585
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
+SI ++IEKA IYPL++V IRKVK+LK P+F++ KLM
Sbjct: 586 ESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLM 624
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 116 bits (278), Expect = 2e-25
Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 3/101 (2%)
Frame = +2
Query: 110 IRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 289
IRKKM EI+TR+V +++L+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 290 EISKLMXXXXXXXXXXXXXXXD---KSERPEGYEPPVQESV 403
E+ KLM + K ER +GYE PVQESV
Sbjct: 171 ELGKLMELHGEGCSSGKATGDETGVKVERADGYELPVQESV 211
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 106 bits (254), Expect = 2e-22
Identities = 49/99 (49%), Positives = 73/99 (73%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
D Y+LR+F I T + +KT YA +Q+RAIR+KM EII R+ ++ L+++ NKLIP
Sbjct: 131 DDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIP 190
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
+ I ++IEKA GIYPL++V IRKVK+LK+P+F++ L+
Sbjct: 191 EVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLL 229
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 101 bits (241), Expect = 8e-21
Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +2
Query: 8 ADGYVLRVFCIGFT-NKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKL 184
AD Y+L +FC+G+T N T R+ AQ+ QV I +I+ D ++L+EV+NKL
Sbjct: 114 ADYYLLCLFCVGYTTNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKL 171
Query: 185 IPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSE 364
+PD++ KD+EKAC IYPL DV +RKVK+L++P+ ++ KL KS+
Sbjct: 172 VPDNVGKDVEKACQFIYPLHDVFVRKVKILQKPKLDLGKL----PELHALGLHGSHRKSD 227
Query: 365 RPEGYEPPVQESV 403
R YEPPVQESV
Sbjct: 228 R---YEPPVQESV 237
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 98.7 bits (235), Expect = 4e-20
Identities = 49/131 (37%), Positives = 75/131 (57%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY LR F I FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIP
Sbjct: 57 DGYTLRFFVIAFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIP 115
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERP 370
DSI +D I+PL +RKVKVLK+P+ ++ +++ + RP
Sbjct: 116 DSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRIL---ELHSEGKADEFGEGVPRP 172
Query: 371 EGYEPPVQESV 403
+ YEPPV ++V
Sbjct: 173 DHYEPPVVDAV 183
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 95.9 bits (228), Expect = 3e-19
Identities = 42/98 (42%), Positives = 68/98 (69%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY+LR+F I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++
Sbjct: 130 DGYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQ 189
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 304
+S+AK+I KA I+PL+++ +RKVK++KRP+ + KL
Sbjct: 190 ESLAKEIGKATRTIFPLQNITLRKVKLVKRPKVDAQKL 227
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 93.1 bits (221), Expect = 2e-18
Identities = 47/79 (59%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = +2
Query: 176 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD 355
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLM +
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDE 60
Query: 356 ---KSERPEGYEPPVQESV 403
K ER EGYEPPVQESV
Sbjct: 61 TGAKVERAEGYEPPVQESV 79
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 89.8 bits (213), Expect = 2e-17
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNK 181
DGY++RVF + FT K + S TCYA+ +QVRAIR+K+ IT + + E
Sbjct: 134 DGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKN 193
Query: 182 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 304
LI + K IEK I+PL+++ IRKVKVLKRP+ + +K+
Sbjct: 194 LIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKI 234
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 79.8 bits (188), Expect = 2e-14
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 14/112 (12%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI- 187
DGY LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V+S++L+ VV+ LI
Sbjct: 130 DGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIG 189
Query: 188 -------------PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 304
++A+ I I+P+ +V IRKVKVLK P+ + +KL
Sbjct: 190 VSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKL 241
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 75.8 bits (178), Expect = 3e-13
Identities = 32/100 (32%), Positives = 63/100 (63%)
Frame = +2
Query: 8 ADGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
ADGY +R+F + FT Q + CYA+ V+ +R ++ ++I R ++ +++E V+ L
Sbjct: 133 ADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLT 192
Query: 188 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
+ ++ + + C+ I PLR++ IRKV+V++ P+F+ L+
Sbjct: 193 RNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALL 232
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 75.4 bits (177), Expect = 4e-13
Identities = 32/89 (35%), Positives = 58/89 (65%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ ++++++ KL
Sbjct: 83 DGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLAN 142
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLK 277
+++ K IE+ I+PL++ C+RKVK +K
Sbjct: 143 ETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 64.1 bits (149), Expect = 1e-09
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY+LRVF I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 131 DGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSN 190
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 286
+ + +A I RDV IR+VKV+KRPR
Sbjct: 191 FEVNAKLTEALQKITMCRDVMIRRVKVVKRPR 222
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 62.1 bits (144), Expect = 4e-09
Identities = 28/89 (31%), Positives = 55/89 (61%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY L++F I + K + KT Y +Q RA+R+++ +II ++ + ++++ ++++
Sbjct: 127 DGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYS 186
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLK 277
I + IE C I+P+ V IRK+KV++
Sbjct: 187 LKIYEKIEINCSKIFPIHQVNIRKIKVVE 215
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 60.5 bits (140), Expect = 1e-08
Identities = 30/92 (32%), Positives = 49/92 (53%)
Frame = +2
Query: 8 ADGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
ADG++LR+F IGFT K S + YA + R +R M + +T ++ + ++ +
Sbjct: 126 ADGFILRLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKDFV 185
Query: 188 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
+ I +I + C I + V I KVKV+K P
Sbjct: 186 DEKIENEIVEKCKQICQIESVYITKVKVIKAP 217
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 59.3 bits (137), Expect = 3e-08
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG+++R+FCIGFT++ + +KT YA+ Q++ IRK M +IT++ S EL + V+ L
Sbjct: 133 DGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYLKK 192
Query: 191 DSIAKDI 211
+ K +
Sbjct: 193 TNFQKKL 199
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 52.8 bits (121), Expect = 3e-06
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +2
Query: 242 RDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD---KSERPEGYEPPVQESV 403
R +C++KVK+LK+P+FE+ KLM + K ER EGYEPPVQESV
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPVQESV 119
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 47.2 bits (107), Expect = 1e-04
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY +RV + FT + A+ +Q RAIRK+M ++I + + E + + +
Sbjct: 106 DGYKVRVAGLAFTTRR---------AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLS 156
Query: 191 ----DSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
+SI + I++A IYP+R IRK +VL+ P
Sbjct: 157 ISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 44.0 bits (99), Expect = 0.001
Identities = 31/92 (33%), Positives = 48/92 (52%)
Frame = +2
Query: 8 ADGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
ADGY LRV + FT + + KT +Q RAIR M +I+ +S + + + +
Sbjct: 115 ADGYKLRVKSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECV 165
Query: 188 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
+ +I K IYP+R V IRK+++L P
Sbjct: 166 LGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 43.6 bits (98), Expect = 0.002
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +2
Query: 8 ADGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
+DGY +RV + ++ S KT IRKK+ E +T + E V +I
Sbjct: 116 SDGYRMRVKVLTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSEYVKYII 166
Query: 188 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
D +++ K IYP+R + IRK +VL P +I +L+
Sbjct: 167 SDDAPRELSKELKVIYPVRRIEIRKSEVLHFPEEKIVELV 206
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 43.6 bits (98), Expect = 0.002
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI- 187
DGY LRV + FT R+ C + +Q AIRK M EI+ + S L E++ ++
Sbjct: 110 DGYGLRVTAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVF 160
Query: 188 ---PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
S+A I+++ IYPLR V I K K+L P
Sbjct: 161 SDHEGSLAYLIDESARKIYPLRKVEIAKSKLLWVP 195
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 41.5 bits (93), Expect = 0.006
Identities = 26/91 (28%), Positives = 46/91 (50%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG V+R+ +G T + +K+ A+RKKM E + + + + + +++
Sbjct: 122 DGMVMRIAVLGITTHRIGTAQKS---------AMRKKMIETLVKKAAELDSGQFLKEILE 172
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
++A D+ I P+R V I K+KVLK P
Sbjct: 173 GTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 39.5 bits (88), Expect = 0.026
Identities = 28/91 (30%), Positives = 47/91 (51%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG+V+RV FT K A+ +Q++AIR+ M +I+ + + ++ + + I
Sbjct: 113 DGFVIRVKPTCFTIKR---------ARSSQMQAIREMMVDIVKKRASETDFETFMQEAIL 163
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
++ I + IYPLR V IRK +V P
Sbjct: 164 GRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 38.3 bits (85), Expect = 0.060
Identities = 28/95 (29%), Positives = 50/95 (52%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DG +RV + T +S+ KT +Q +AIR+ M +II+ S + + + +
Sbjct: 111 DGVKMRVMALAVT----VSRIKT-----SQKKAIRRIMFDIISEKAASLDFDTFIQQAVI 161
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 295
++A +++ IYP++ V + K+KVL P EI
Sbjct: 162 GTMATEMQMQAKKIYPIKKVEVYKIKVL-TPTTEI 195
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 36.3 bits (80), Expect = 0.24
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +2
Query: 95 TQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 274
T IRK + + + + S+ +V I I D+ IYPLR V I K+KVL
Sbjct: 137 THKHLIRKSIMDRLDKVGQESDFDSLVRDSIMGKIQVDLFNVAKKIYPLRKVEIIKIKVL 196
Query: 275 KRPR 286
+ PR
Sbjct: 197 EYPR 200
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 35.5 bits (78), Expect = 0.42
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 86 AQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 265
A +Q +AIR+ M +++ ++++ ++ ++ I IYPLR V I+K
Sbjct: 126 ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT 185
Query: 266 KVLKRP 283
+ RP
Sbjct: 186 TLEARP 191
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 35.1 bits (77), Expect = 0.56
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 77 TCYAQHT-QVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 253
T Y H Q IRK M +++ + E V ++I ++A +I I PLR
Sbjct: 130 TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLANNIFNEAKKIAPLRKAE 189
Query: 254 IRKVKVLKRPRFEISK 301
I K KVL P + K
Sbjct: 190 IEKSKVLFAPLIKEGK 205
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 35.1 bits (77), Expect = 0.56
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 110 IRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 280
+R K+ I S L E+ +I D++ DI +YP++ + IRK +VL R
Sbjct: 137 VRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEVLGR 193
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 33.9 bits (74), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 92 HTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 271
+T+ IRK + + I S E V LI D I D+ A IYPL+ + +RK ++
Sbjct: 132 NTKKFQIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSEL 191
Query: 272 L 274
+
Sbjct: 192 V 192
>UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S3Ae -
Methanoregula boonei (strain 6A8)
Length = 201
Score = 33.5 bits (73), Expect = 1.7
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +2
Query: 26 RVFC-IGFTNKDTLSQRKT--CY----AQHTQVRAIRKKMCEIITRDVTSSELREVVNKL 184
R+ C + KD R T CY A Q A+R + + + +L +VN +
Sbjct: 103 RIDCHVQVVTKDNKKVRLTISCYTFARANIAQEHALRNAITAGLVAQAQAWDLNTLVNGV 162
Query: 185 IPDSIAKDIEKACHGIYPLRDVCIRKVKV 271
+ I+KD+ K +YP R V I K KV
Sbjct: 163 VSGEISKDLFKLVKTLYPTRRVEIIKSKV 191
>UniRef50_Q00U98 Cluster: Chromosome 16 contig 1, DNA sequence; n=2;
Ostreococcus tauri|Rep: Chromosome 16 contig 1, DNA
sequence - Ostreococcus tauri
Length = 537
Score = 32.7 bits (71), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 401 RSPEPVVRNPLAFLTCLQPLPVYRCRLHRAAPSAWRFQNAAS 276
R P P+VR +L+ LQ LP + C LHR S + + +AS
Sbjct: 407 REPVPIVRERKRWLSMLQRLPRWEC-LHRRTRSECKLRRSAS 447
>UniRef50_Q4D9C8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 344
Score = 32.3 bits (70), Expect = 4.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 200 RWSQESACSRLHEALNWSHR 141
RW S+ SR+H AL+WSHR
Sbjct: 67 RWQGRSSESRVHRALSWSHR 86
>UniRef50_A1ZBM9 Cluster: CG15904-PA; n=2; Sophophora|Rep:
CG15904-PA - Drosophila melanogaster (Fruit fly)
Length = 632
Score = 31.9 bits (69), Expect = 5.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 256 NADITKWVDTVTRLFDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDC 107
+A++T +T L D++S GV L+H FT++ T + + DC
Sbjct: 265 SANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
>UniRef50_Q6FNX0 Cluster: DNA damage checkpoint protein LCD1; n=1;
Candida glabrata|Rep: DNA damage checkpoint protein LCD1
- Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 667
Score = 31.9 bits (69), Expect = 5.2
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -2
Query: 238 WVDTVTRLFDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDCADLGMLSVACLALAER 59
W D +TRL+ +L + N V D T HI D F F+ ++G SV+ L LA+
Sbjct: 368 WSDLLTRLYQLLGKRILNFHVFDDTNTNNMHI--DRFFDFYSLLRNMGTNSVSPL-LAQL 424
Query: 58 ILVGE 44
+ GE
Sbjct: 425 VTRGE 429
>UniRef50_Q21148 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 308
Score = 31.5 bits (68), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 313 QLHQLGDFKTRPLQYFHLPNADITKWVDTVT 221
QLHQ+ + PLQ+ H PN D+ +D T
Sbjct: 59 QLHQINSAEQSPLQFTHQPNCDLIVVLDEQT 89
>UniRef50_UPI0000DC0F75 Cluster: UPI0000DC0F75 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0F75 UniRef100 entry -
Rattus norvegicus
Length = 870
Score = 31.1 bits (67), Expect = 9.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 404 RRSPEPVVRNP-LAFLTCLQPLPVYRCRLHRAAPSAWRFQNA-ASSILSPS*CRHHEVGR 231
R SP P + L FL +Q LP Y +HR +P+ R + A I + + G
Sbjct: 746 RLSPAPQGEDAELEFLEVVQQLPEYGVLVHRVSPAKKRQEGGMALGICTKGIIVYEVKGS 805
Query: 230 YRDTPFRYP*R 198
R T F++P R
Sbjct: 806 RRTTTFQFPWR 816
>UniRef50_Q21DT8 Cluster: ABC-1; n=1; Saccharophagus degradans
2-40|Rep: ABC-1 - Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024)
Length = 480
Score = 31.1 bits (67), Expect = 9.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 152 SSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 265
+S+L + L+P+ I K++ K+C+ + P+ IRK+
Sbjct: 90 ASQLLSLEADLLPEGIRKELAKSCYQVPPINRALIRKM 127
>UniRef50_Q090W0 Cluster: Gp248; n=3; Cystobacterineae|Rep: Gp248 -
Stigmatella aurantiaca DW4/3-1
Length = 325
Score = 31.1 bits (67), Expect = 9.1
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 113 RKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 283
R + CE RD+ + + N + ++A + C G++P D +R+++ K P
Sbjct: 223 RLRHCERAWRDLLGDRVISMENPVDTVAVAAGLVGLCEGVFPNLDALVRRLEKEKMP 279
>UniRef50_A7PP68 Cluster: Chromosome chr8 scaffold_23, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr8 scaffold_23, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 685
Score = 31.1 bits (67), Expect = 9.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 45 SPTRIRSANARHATLSIPKSAQSGKK----CVKSSRAM*P 152
SP+R RS +++H SIPKS+ + + C KS R+ P
Sbjct: 397 SPSRSRSVSSKHFLSSIPKSSSTSRNSRSGCAKSRRSSSP 436
>UniRef50_A0CUU7 Cluster: Chromosome undetermined scaffold_284,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_284,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1769
Score = 31.1 bits (67), Expect = 9.1
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 53 KDTLSQRKT-CYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHG 229
K TL+ ++T CY ++Q I+ CE+IT D S+EL + N P + + + C+
Sbjct: 809 KLTLTYQQTRCYYLNSQCFQIQSSQCELIT-DSQSNELCQYYN---PQCVLQPSGQGCYS 864
Query: 230 IYPLRDV 250
I D+
Sbjct: 865 INSCNDL 871
>UniRef50_Q6LTM2 Cluster: Chemotaxis response regulator
protein-glutamate methylesterase 2; n=3;
Gammaproteobacteria|Rep: Chemotaxis response regulator
protein-glutamate methylesterase 2 - Photobacterium
profundum (Photobacterium sp. (strain SS9))
Length = 394
Score = 31.1 bits (67), Expect = 9.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 128 EIITRDVTSSELREVVNKLIPDSIAKDIE-KACHGIYPLRDVCIRKVKVLKRPRFEISKL 304
E+I V E E+V KL PD I DIE GI +R++ +KVL P S L
Sbjct: 29 EVIGNAVNGKEAVELVKKLQPDVITMDIEMPVMDGITAVREI----MKVLPTPILMFSSL 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,297,220
Number of Sequences: 1657284
Number of extensions: 6953616
Number of successful extensions: 18467
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 18122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18451
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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