Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G19
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   107   9e-25
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   103   8e-24
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   0.65 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.0  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   3.5  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  107 bits (256), Expect = 9e-25
 Identities = 48/99 (48%), Positives = 71/99 (71%)
 Frame = +2

Query: 11  DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
           DGY+ RVF IGFT +     +KT YAQ +Q+RAIR+KM ++I    +S  +RE+V KLIP
Sbjct: 131 DGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIP 190

Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
           + I ++IE+A   I+PL++V +RKVK+LK P+ +  KL+
Sbjct: 191 EVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  103 bits (248), Expect = 8e-24
 Identities = 46/99 (46%), Positives = 69/99 (69%)
 Frame = +2

Query: 11  DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
           DGY+ R+F IGFT++     +KT YAQ +Q+RAI +KM ++I        ++E+V KLIP
Sbjct: 131 DGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIP 190

Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 307
           + I + IEKA + IYPL++V +RKVK+LK P+ +  KL+
Sbjct: 191 EVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 128 EIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 259
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 32  FCIGFTNKDTLSQRKTCY 85
           FC G  NKDT+   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 3   TRLTDMSYVFSASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSRA 143
           TR   +S + SA  SPT+  +  +   + SIPK+ +  +   ++S A
Sbjct: 391 TRENLLSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTPSENSAA 437


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 17   YVLRVFCIGFTNKDTLSQRKTC 82
            YV ++   G  NK+T S RKTC
Sbjct: 1721 YVTQLILSGLLNKNTNSIRKTC 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,141
Number of Sequences: 5004
Number of extensions: 29198
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)