Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G19
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 161 2e-40
SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2) 29 2.0
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 28 3.4
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07) 27 6.0
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0) 27 6.0
SB_33075| Best HMM Match : Big_2 (HMM E-Value=1.7) 27 7.9
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 161 bits (391), Expect = 2e-40
Identities = 75/134 (55%), Positives = 99/134 (73%), Gaps = 3/134 (2%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY+LR+FCIGFT + +KT YA+HTQ++AIRKKM +IITR+V++++L+EVVNKLIP
Sbjct: 14 DGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIP 73
Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERP 370
DSI KDIEK+C IYPL DV IRKVKVLK+P+F+I KLM D++
Sbjct: 74 DSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTK 133
Query: 371 ---EGYEPPVQESV 403
EG+EPP+Q++V
Sbjct: 134 IDREGFEPPIQDTV 147
>SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)
Length = 287
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 TCFLHRFHQQGYAQPTQDMLRSAYPSPRNQEK-NV*NHHARCDQFRAS*SREQADS*LHR 201
TC +F + G P + R P PR EK V R ++F A SR++ ++R
Sbjct: 214 TCIKTKFEEMGIQLPKVEYKRPPTPQPRPPEKPEVVEQRRRQNKFAAMKSRKKRTERINR 273
>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 44 FTNKDTLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 214
FT+K + + + C+ + + + K ++T+ S +REV+ K +PD IE
Sbjct: 38 FTSKALVQRVRPCFQEFLSSALSSEKLFVAVVTQSPQVSLVREVLEKALPDCDTTKIE 95
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 27.9 bits (59), Expect = 3.4
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -2
Query: 235 VDTVTRLFDILSDGVRNQLVHDFTKL*TG-HIARDDFTHFFPDCADLGMLS-VACLALAE 62
+DTV+ LFDIL+ GV + ++H +K A ++ TH P A++ AC A E
Sbjct: 441 MDTVSSLFDILTFGVFSNVLHATSKQDMEISSATEEKTHSVP--AEIRARGREACEAFQE 498
Query: 61 RILVGET 41
+ G+T
Sbjct: 499 ALENGQT 505
>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 83 YAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCI 256
+A + R C +TS R+VV L+ AK K CHG PL CI
Sbjct: 357 HANESDARFCNAVFCMTFVVTLTSIYERQVVELLLNHK-AKINVKDCHGNTPLHFCCI 413
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 3 TRLTDMSYVFSASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSRAM*P 152
+RL + S S + SPT I S+ +HA L P + S K SS M P
Sbjct: 261 SRLINRSTGNSGTASPTFITSSANKHAQLP-PSAPASPKPSTPSSEGMPP 309
>SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)
Length = 302
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
DGY ++V GF L Q+ Y QH R + + + + S R+++ KL+P
Sbjct: 242 DGYCVQVGQTGFR---CLCQQTGYYGQHCHERCPSSEEVSKVFKTMWKSNNRKLMRKLLP 298
>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
Length = 2232
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 TCYAQHTQVR--AIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 250
T + +VR I + + + R VTS+ R+++ L + K++ C+G + DV
Sbjct: 373 TLFKHDIRVRKGVIVESLIHLPMRQVTSAVKRDLIQLLNRSRLTKNVMVLCNGFASIEDV 432
Query: 251 CIRKVKVL 274
K VL
Sbjct: 433 DRFKSNVL 440
>SB_33075| Best HMM Match : Big_2 (HMM E-Value=1.7)
Length = 334
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 58 YAQPTQDMLRSAYPSPRNQEKNV 126
Y +PT L YPS RN + N+
Sbjct: 238 YRRPTAHSLAKTYPSTRNHKPNI 260
>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 74 KTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 253
K C+ + ++ +CE R+V + V K + D++ D K ++ L +C
Sbjct: 482 KKCFVEKQAFPSLESCVCEENMREVKGAMDDGAVKKKLNDNLQDDSRK---DVFHLEQIC 538
Query: 254 IRKVK 268
+ VK
Sbjct: 539 LYPVK 543
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,531
Number of Sequences: 59808
Number of extensions: 232008
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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