Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G19
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   128   2e-30
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    31   0.25 
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  128 bits (309), Expect = 2e-30
 Identities = 61/131 (46%), Positives = 85/131 (64%)
 Frame = +2

Query: 11  DGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP 190
           DGY LRVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIP
Sbjct: 129 DGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIP 188

Query: 191 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERP 370
           DSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L                +K +RP
Sbjct: 189 DSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRL--HDLHGDSITVGADGEKVDRP 246

Query: 371 EGYEPPVQESV 403
           + YEPPVQ+ V
Sbjct: 247 DDYEPPVQQEV 257


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 313 QLHQLGDFKTRPLQYFHLPNADITKWVDTVT 221
           QLHQ+   +  PLQ+ H PN D+   +D  T
Sbjct: 59  QLHQINSAEQSPLQFTHQPNCDLIVVLDEQT 89


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 83   YAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
            Y   T     ++   E+IT D+ +SEL++ + KL+
Sbjct: 2954 YRNRTDTSIDKRSKPEVITEDLETSELQDEIMKLV 2988


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 83   YAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 187
            Y   T     ++   E+IT D+ +SEL++ + KL+
Sbjct: 2954 YRNRTDTSIDKRSKPEVITEDLETSELQDEIMKLV 2988


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 146 VTSSELREVVNKLIPDSIAK 205
           V S  LR+VV K +PD +AK
Sbjct: 208 VISDRLRKVVEKFLPDDVAK 227


>Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical
           protein F54D5.15c protein.
          Length = 561

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 26  RVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSEL 163
           R+FC+ + +    +   T + Q  ++ +  KK+    T D+TSS+L
Sbjct: 23  RMFCVSYASTQQSANTPTIHEQQEEIYSSLKKV--RTTDDLTSSQL 66


>Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical
           protein F54D5.15a protein.
          Length = 563

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 26  RVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSEL 163
           R+FC+ + +    +   T + Q  ++ +  KK+    T D+TSS+L
Sbjct: 25  RMFCVSYASTQQSANTPTIHEQQEEIYSSLKKV--RTTDDLTSSQL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,606
Number of Sequences: 27780
Number of extensions: 166804
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)