Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G19
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 67  PTQDMLRSAYPSPRNQEKNV*NHHARCD 150
           P+  +L S      N+EK+  NHH   D
Sbjct: 44  PSPSLLTSQPHQDHNKEKSKNNHHCNQD 71


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -1

Query: 389 PVVRNPLAFLTCLQPLP--VYRCRLHR 315
           P VRN   ++ C +P P  V+   L R
Sbjct: 208 PAVRNEAFYICCEEPYPDIVFNITLRR 234


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 107 RGLGYAERSMSC 72
           +G+GYA   MSC
Sbjct: 60  KGIGYAAAVMSC 71


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 306 WSCTVKAAAVNGERLETSQKGQRV 377
           WS TVKAA    +R+   +  ++V
Sbjct: 393 WSATVKAAISEVQRVVLGRLCEKV 416


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 306 WSCTVKAAAVNGERLETSQKGQRV 377
           WS TVKAA    +R+   +  ++V
Sbjct: 431 WSATVKAAISEVQRVVLGRLCEKV 454


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +1

Query: 16   ICPTCFLHRFHQQGYAQPTQDMLRSAYPSPRN 111
            ICP    H    +    P++ M    +P P N
Sbjct: 1722 ICPYATFHLLGFREEMDPSKAMQFQTFPHPGN 1753


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 185 SACSRLHEALNWS 147
           +AC+ L+E + WS
Sbjct: 49  TACAALYERVEWS 61


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 34 LHRFHQQGYAQPTQ 75
          L   ++QG+ QPTQ
Sbjct: 16 LSNAYKQGFCQPTQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,245
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)