Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G17
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    29   0.94 
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    29   0.94 
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    29   0.94 
AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical ...    27   2.9  
AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical...    26   8.7  

>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYLDNFIVCK 351
           N  +RQC  L LP+Y+ Y  T S ++   L  F+  K
Sbjct: 45  NNTVRQCTFLDLPSYTVYSATGSFFIPTLLMFFVYFK 81


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYLDNFIVCK 351
           N  +RQC  L LP+Y+ Y  T S ++   L  F+  K
Sbjct: 171 NNTVRQCTFLDLPSYTVYSATGSFFIPTLLMFFVYFK 207


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYLDNFIVCK 351
           N  +RQC  L LP+Y+ Y  T S ++   L  F+  K
Sbjct: 171 NNTVRQCTFLDLPSYTVYSATGSFFIPTLLMFFVYFK 207


>AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical
           protein T04B8.2 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 235 LSNPLIRQCPNLSLPTYSQYITT 303
           LS+PLIR+C +L +   + YITT
Sbjct: 133 LSHPLIRKCHHLKILGDNSYITT 155


>AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical
           protein Y56A3A.14 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 LAHLEIDQNVDLSNPLIRQCPNLSL 276
           L HLE+   V L++ LI  C N S+
Sbjct: 185 LLHLEVKTKVTLNDILISNCSNFSI 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,922,134
Number of Sequences: 27780
Number of extensions: 107433
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)