Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G16
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    31   0.054
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    28   0.38 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   1.5  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   2.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   2.7  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    24   4.7  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   8.3  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 30.7 bits (66), Expect = 0.054
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 286 IITPWRSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 176
           II+ W S+++++SS  G + ++   LLFLR    ++S
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSS 502


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 HSESRAHQHNHRPPRGDDEQAHTVSS 310
           +S+++AHQ  H P    + Q HT +S
Sbjct: 41  NSDAKAHQPQHSPQHSTENQGHTGTS 66


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 212 RQHEHRIHSESRAHQHNHRPPRGDDEQAH 298
           R++E R    SRAH +++   R DD+++H
Sbjct: 189 RRYEERSSRSSRAHDYDYEDLR-DDDRSH 216


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  AVLLVGGEAKFYKDCGSQLATVQTVMVTGCSQDARECVLRR 203
           A++++       + C     ++  VMVT C Q AR+  L R
Sbjct: 405 AIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRARQSHLNR 445


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 171 CTRSP*QSARWLTATHNPCKIWLHH 97
           C +S  +S  WL   HN  +IW+ H
Sbjct: 407 CYKSFRESRTWLHFLHNFSRIWILH 431


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 VTSA*TSNSLRIKSSPA*PQTST 276
           +TS  TS++++I S P+ P T T
Sbjct: 211 ITSMNTSSNVKISSDPSSPSTQT 233


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 DCGSQLATVQTVMVTGCSQDARECVLRRNSNVSM 221
           DC SQL      M TG S+ A++ V  R+  + +
Sbjct: 719 DCKSQLNAYLMQMRTGLSEKAKDHVYVRSKTLPL 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,423
Number of Sequences: 5004
Number of extensions: 23035
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)