Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G16
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 0.33
04_04_1377 - 33064906-33065607 27 2.3
01_07_0326 - 42750189-42750965 27 2.3
05_05_0266 - 23694466-23696787,23696885-23697187 27 3.1
01_03_0055 + 12074512-12076155 27 4.1
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 26 5.4
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 26 5.4
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 26 7.1
11_04_0105 - 13505786-13505800,13505940-13506043,13506421-135066... 26 7.1
06_01_0036 + 364316-365758 26 7.1
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508 26 7.1
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769... 26 7.1
02_02_0310 - 8842286-8843314 26 7.1
10_06_0019 - 9688395-9688867,9688905-9689070 25 9.4
08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215... 25 9.4
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 25 9.4
04_04_0946 - 29579779-29580004,29580098-29580210 25 9.4
03_04_0243 + 19298293-19299117 25 9.4
02_04_0452 + 23044190-23045227 25 9.4
02_02_0222 - 8017291-8018454 25 9.4
01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178 25 9.4
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 212 RQHEHRIHSESRAHQHNHRPPRGDD 286
R+ + HS SR+H+H+H GDD
Sbjct: 1225 RRSSKKDHSSSRSHRHHHHRSSGDD 1249
>04_04_1377 - 33064906-33065607
Length = 233
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 158 GDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRPPRGDDEQAH 298
G RV + + G+ A E + H H H H P G+++ H
Sbjct: 157 GSRVDALQTGMMVAPTT-HHRERQKHHHHHHHHHPHLQPHGEEQHHH 202
>01_07_0326 - 42750189-42750965
Length = 258
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAPGHHDSLHG 141
G G+LL+ SEF A V V Q+ + + A G + G
Sbjct: 218 GPIGDLLVSSEFSKMASVLVMQQYVITAAAAAGGARRAADG 258
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAP 165
G G+LL+ SEF A V V Q+ + + L P
Sbjct: 795 GPIGDLLVSSEFSKMASVLVMQQYVITAPLPPP 827
>01_03_0055 + 12074512-12076155
Length = 547
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 224 HRIHSESRAHQHNHRPPRGDD 286
HR+H H +H+ RGDD
Sbjct: 357 HRVHHHHHHHNGHHKRRRGDD 377
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 200 KKQ*RQHEHRIHSESRAHQHNHRPPRGDDEQA 295
KK+ R+H+ R H +S++ +H H D E++
Sbjct: 187 KKEKRKHKKRHHHKSKSKRH-HSSENSDSEES 217
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 102 EAKFYKDCGSQLATVQTVMV-TGCSQDARECVLRRNSNVSMNIEFTPNQELTSITTDLHG 278
EA F CG+ + Q + T +DA L N+ I PN T TTD+
Sbjct: 156 EALFNTSCGALVFKDQYIEASTSLPRDAALYGLGENTQPG-GIRLRPNDPYTIYTTDISA 214
Query: 279 VMMN 290
+ +N
Sbjct: 215 INLN 218
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 293 PVHHHPVEVCGYAGELLIRSEFDVHADVTVSSQHALPSVLTAP 165
P HP G + LLIRS D + VT+S + + AP
Sbjct: 102 PSGRHPAFPWGASTHLLIRSPADPPSTVTISRRKLEARLANAP 144
>11_04_0105 -
13505786-13505800,13505940-13506043,13506421-13506649,
13506661-13506954,13507139-13507338,13507531-13507585
Length = 298
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 21 HNTSARSPFLI*KMLIFISIAVLLVGGEAKFYKDCG 128
H + L+ + IF+SI+ LLV G+A F CG
Sbjct: 255 HYEVPQGSLLLGQWRIFMSISDLLVFGQASFNLFCG 290
>06_01_0036 + 364316-365758
Length = 480
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 24 NTSARSPFLI*KMLIFI---SIAVLLVGGEAKFYKDCGSQLATV--QTVMVTGCSQDARE 188
+ + SP ++ K+ F+ + L VGG K S LA+ + V+ ++ E
Sbjct: 384 DAAGASPDVVSKVEQFVLRPRVERLAVGGGDKLPPPLQSMLASAGFAALQVSNAAEAQAE 443
Query: 189 CVLRRNSNVSMNIE 230
C+LRR ++ ++E
Sbjct: 444 CLLRRTASHGFHVE 457
>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
Length = 654
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 33 ARSPFLI*KMLIFISIAVLLVGGEAKFYKDCGSQLATVQTVMVTGC 170
+R L+ + + +++A+LL GG A+ CGS GC
Sbjct: 7 SRRALLLFFLEVAVAMALLLPGGHARVCPPCGSTEVPYPLSTADGC 52
>04_04_1411 +
33375988-33376045,33376161-33376551,33376830-33376912,
33377209-33377297,33377481-33377554,33377768-33377818,
33377861-33377900,33378567-33378593,33379191-33379874
Length = 498
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 230 IHSESRAHQHNHRPPRGDDEQAHTVSSS 313
+H + + HQH H+ + D+Q SS
Sbjct: 425 LHEQQQQHQHQHQQEQQQDQQDDQSQSS 452
>02_02_0310 - 8842286-8843314
Length = 342
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 188 VRAAKKQ*RQHEHRIHSESRAHQHNHR 268
V AA+++ R+H R+H H+HR
Sbjct: 166 VAAAEEEDEDEMARLHHGRRSHHHHHR 192
>10_06_0019 - 9688395-9688867,9688905-9689070
Length = 212
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 233 EFDVHADVTVSSQHALPSVLTAPGHHDSLHG 141
EF +H DV V + A + ++ D LHG
Sbjct: 143 EFAIHCDVAVVEEAAAAATMSTELGPDDLHG 173
>08_01_0267 -
2153421-2153759,2153895-2154098,2154358-2154429,
2154514-2154599,2154704-2154830,2154899-2155052,
2156129-2156451
Length = 434
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 233 HSESRAHQHNHRPP--RGDDEQAHTVSS 310
HS+S+ H H RPP R DDE +S
Sbjct: 384 HSQSKKH-HKRRPPPGRADDESVDLEAS 410
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRPPRGDDEQAH 298
H++ + H H+H PPR H
Sbjct: 55 HQYHLPDHHHHHHHHHPPPRVQHHHHH 81
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 161 DRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRPPR 277
DR + RR AA + EHR H H H PR
Sbjct: 56 DRAKHRRKKRAAAHAVSVRKEHRNHHHHHRHHHQQPQPR 94
>03_04_0243 + 19298293-19299117
Length = 274
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 236 SESRAHQHNHRPPRGDDEQAHTVSS 310
S SR QH H PPR AH SS
Sbjct: 79 SGSRQQQHPHPPPRPCLLSAHLASS 103
>02_04_0452 + 23044190-23045227
Length = 345
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRPP 274
H H HS SRAH + RPP
Sbjct: 182 HSHS-HSHSRAHNPSTRPP 199
>02_02_0222 - 8017291-8018454
Length = 387
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -2
Query: 245 LIRSEFDVHADVTVSSQHALPSVLTAPG----HHDSLHGG 138
++RS ++H D V LP L PG HD + G
Sbjct: 55 VVRSVVELHDDAAVGEYRDLPDPLVLPGCAPLRHDEIPDG 94
>01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178
Length = 605
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 302 RYGPVHHHPVEVCGYAGEL 246
R G + H+ + +CG++GEL
Sbjct: 261 RIGKLVHNEIVICGFSGEL 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,835
Number of Sequences: 37544
Number of extensions: 170277
Number of successful extensions: 485
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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