Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G16
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.87 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   1.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHNHRPPRGDDEQAHTVSS 310
           H H   ++S  H H  +PP   +  +  V+S
Sbjct: 352 HHHHHQTQSLQHLHYRQPPTLSESYSSYVNS 382


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 168 CSQDARECVLRRNSNVSMNI 227
           CS+ +  C+  RNS+  +NI
Sbjct: 100 CSKTSNPCLPHRNSDRDLNI 119


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/54 (16%), Positives = 24/54 (44%)
 Frame = +2

Query: 131 AVSHRADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRPPRGDDEQ 292
           ++ HR     ++ +     +R  +++ R+H  R+ S+ +  Q   +      +Q
Sbjct: 53  SIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQ 106


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHN 262
           H H  H+ +  HQH+
Sbjct: 431 HHHHSHAATPHHQHS 445


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 225 CSC*RYCFFAARTP*RLDCTRSP 157
           C C    F A + P ++ CT+ P
Sbjct: 296 CRCDPGYFRAEKDPKKMPCTQPP 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,567
Number of Sequences: 438
Number of extensions: 1739
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)