Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G15
(288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 56 4e-09
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 56 4e-09
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 56 4e-09
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 34 0.019
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.019
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.019
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.033
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.033
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.057
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.057
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.057
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 31 0.13
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 31 0.13
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 31 0.13
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.13
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 0.31
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.40
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 0.71
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 0.71
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 0.71
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 0.71
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 0.71
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 1.2
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 1.2
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 27 1.6
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 2.2
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 27 2.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 27 2.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 27 2.2
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 2.2
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 26 3.8
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 26 3.8
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 26 3.8
Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical pr... 25 6.6
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 25 6.6
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 25 8.7
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 25 8.7
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 25 8.7
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 25 8.7
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 25 8.7
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 25 8.7
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 56.0 bits (129), Expect = 4e-09
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 56.0 bits (129), Expect = 4e-09
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 56.0 bits (129), Expect = 4e-09
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 33.9 bits (74), Expect = 0.019
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 207 LEREFDQYGKLNSVWVALNPPGFAFI 284
+E F G + S+W+A PPGFAF+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFV 69
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 135 HTIMSSGGTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALN-----PPGFAFIE 287
H+ + +++VGG+ + EDL F QYG++ V + GFAF+E
Sbjct: 21 HSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 31.9 bits (69), Expect = 0.076
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSV 248
+V+VGGL ++DL F+Q+GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 135 HTIMSSGGTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALN-----PPGFAFIE 287
H+ + +++VGG+ + EDL F QYG++ V + GFAF+E
Sbjct: 21 HSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 31.9 bits (69), Expect = 0.076
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSV 248
+V+VGGL ++DL F+Q+GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.033
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 144 MSSGGT---RVYVGGLVEGIKKEDLEREFDQYGKLNSVWV-ALNPPGFAFIE 287
M GG+ +VYVG L ++++++E F +YG++ V + + P FAF+E
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVE 52
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.033
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 144 MSSGGT---RVYVGGLVEGIKKEDLEREFDQYGKLNSVWV-ALNPPGFAFIE 287
M GG+ +VYVG L ++++++E F +YG++ V + + P FAF+E
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVE 52
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G L + ++D+E F YG++ V L GF F+E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVE 42
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G L + ++D+E F YG++ V L GF F+E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVE 42
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G L + ++D+E F YG++ V L GF F+E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVE 42
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G + ++ D+ER YGK+N++ + GFAF++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVD 41
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G + ++ D+ER YGK+N++ + GFAF++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVD 41
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
R+Y+G + ++ D+ER YGK+N++ + GFAF++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVD 41
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVW 251
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
RVY+G L D+E F YGKL+ V + GF F++
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVD 41
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSVWV----ALNPPGFAFIE 287
++VG + + L REF+ YGK+ + + A P G+AFIE
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIE 150
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 28.7 bits (61), Expect = 0.71
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 156 GTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALN-----PPGFAFIE 287
G VYVG ++DL F Q G +++V + + P GFAF+E
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 294
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GTRVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALN---PPGFAFI 284
R+YV + +++DL F YG++ SV + N GF F+
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFV 95
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALN---PPGFAFI 284
R+YV + +++DL F YG++ SV + N GF F+
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFV 95
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPGFAFIE 287
++ L + E LE F+Q+ L + + N PG AF+E
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVE 174
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKL 239
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREF-DQYGKLNSVWVALNPP-----GFAFI 284
+++VGGL +DL REF Q+G++ + V +P GF F+
Sbjct: 24 KIFVGGLTSN-TTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREF-DQYGKLNSVWVALNPP-----GFAFI 284
+++VGGL +DL REF Q+G++ + V +P GF F+
Sbjct: 24 KIFVGGLTSN-TTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREF-DQYGKLNSVWVALNPP-----GFAFI 284
+++VGGL +DL REF Q+G++ + V +P GF F+
Sbjct: 24 KIFVGGLTSN-TTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKL 239
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNP-----PGFAFIE 287
R+++ L K++DL+ F +YG+++ V V ++ GFA +E
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVE 326
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKL 239
+++VG + ++++DL F+Q+GK+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSV 248
+Y+GGL + + D+ F QYG++ ++
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNI 67
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKL 239
+++VG + ++++DL F+Q+GK+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical
protein C33G3.4 protein.
Length = 900
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 279 MQNQGDLMLPILSLIFHIDQTPARD---LPS*FPLRAHRRIREYLHCS*LY 136
M + G+ + PIL+ FHID PA L + + EYL+ S LY
Sbjct: 745 MLSWGNGLDPILTNEFHIDSVPAGSSEVLKTGITFSKITELSEYLYVSTLY 795
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 123 VNTNHTIMSSGGTRVYVGGLVEGIKKEDLERE----FDQYGKL 239
+N NHTI YV L E +KK++L+R F Q+G++
Sbjct: 4 INPNHTI--------YVNNLNEKVKKDELKRSLHMVFTQFGEI 38
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 212 LEIFLLDSLYEPTDVYASTSTAHDCMVCVYEVRLLY 105
L FL++ + P+ VY S S A ++ V + L+Y
Sbjct: 21 LNAFLINKQFYPSIVYLSKSNASMAVIYVQGIVLVY 56
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSV 248
++VG + +K+ ++ F+++GK+ V
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEV 198
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSV 248
++VG + +K+ ++ F+++GK+ V
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEV 198
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +3
Query: 165 VYVGGLVEGIKKEDLEREFDQYGKLNSV 248
++VG + +K+ ++ F+++GK+ V
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEV 175
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
RVYV + + + DL+ F+ +G++ +A P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
RVYV + + + DL+ F+ +G++ +A P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 162 RVYVGGLVEGIKKEDLEREFDQYGKLNSVWVALNPPG 272
RVYV + + + DL+ F+ +G++ +A P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,805,543
Number of Sequences: 27780
Number of extensions: 94027
Number of successful extensions: 326
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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