Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G14
(237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 60 4e-11
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 60 4e-11
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 0.44
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 24 2.3
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 2.3
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 23 5.4
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 23 5.4
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 22 9.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 22 9.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 22 9.4
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 60.1 bits (139), Expect = 4e-11
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Frame = +2
Query: 47 QWKGYV-PCCGGNDTAS--L*TGVLTNSRVVSDVK-GHSCYRPRRDGERKRKSVRGCIGD 214
++ GYV GGND + GVL RV ++ GH CYRPRRDGERKRKSVRGCI
Sbjct: 44 EFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVG 103
Query: 215 ANLSGLA 235
+L+ LA
Sbjct: 104 QDLAVLA 110
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 60.1 bits (139), Expect = 4e-11
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Frame = +2
Query: 47 QWKGYV-PCCGGNDTAS--L*TGVLTNSRVVSDVK-GHSCYRPRRDGERKRKSVRGCIGD 214
++ GYV GGND + GVL RV ++ GH CYRPRRDGERKRKSVRGCI
Sbjct: 44 EFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVG 103
Query: 215 ANLSGLA 235
+L+ LA
Sbjct: 104 QDLAVLA 110
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.6 bits (56), Expect = 0.44
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 87 QLPYKQES*LTAVSSLMSKATLATDHVVTVRGNASLFVVA*G 212
++P K LT VSS+ T+AT+ ++ +G + F++ G
Sbjct: 61 EIPRKVPLDLTRVSSIRMGTTVATNALLERKGEKTAFIITEG 102
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 25 EVDASSSTMERLCSVLRR 78
E++A+ S+ E++C+ LRR
Sbjct: 1057 EINAADSSSEQICNALRR 1074
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 10 KRMGAEVDASSSTMERLCS 66
K+ AE++ASS T++RL S
Sbjct: 955 KKREAEIEASSKTVKRLAS 973
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 102 VYREAVSLPPQHGT*PFHCARRCINFSAHTLFI 4
+YR + Q P +C C+N A+TLF+
Sbjct: 327 LYRPYFNFLRQKKLIPINC--ECLNIKAYTLFV 357
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 65 EHNLSIVLEDASTSAPIR 12
++NLS++ ED+ TS PI+
Sbjct: 256 QNNLSLLEEDSWTSVPIQ 273
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 223 KVSIPYATTNRLAFPLTVTT 164
+V++PY L FP VTT
Sbjct: 373 QVAVPYRIAKILTFPERVTT 392
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 22.2 bits (45), Expect = 9.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 165 RGL*QEWPLTSETTRLLVRTPVYREAVSLPPQHGT*PFHCARRCINFSA 19
+GL Q W L + TT LL + SLP T P +C +F A
Sbjct: 193 KGLTQCWRLANATTLLLRKAEKDSRGHSLPSVL-TQPINCQADARSFYA 240
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 108 TPVYREAVSLPPQH 67
+P++ +VSLPP H
Sbjct: 43 SPLHANSVSLPPSH 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 940,811
Number of Sequences: 5004
Number of extensions: 14873
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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