Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G14
(237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 47 2e-06
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 46 6e-06
03_02_0970 + 12805537-12806253 29 0.53
03_02_0816 + 11487811-11488708,11488835-11489235 29 0.70
07_03_0004 - 12260322-12261432,12261691-12261821,12262386-122624... 28 1.2
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 27 2.1
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541... 26 4.9
10_08_0978 + 21994359-21996961,21997089-21998229 26 4.9
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 25 6.5
12_02_1137 - 26392399-26392613,26392828-26393233 25 8.6
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 25 8.6
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 46.8 bits (106), Expect = 2e-06
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Frame = +2
Query: 47 QWKGYV-PCCGGNDTAS--L*TGVLTNSRVVSDV-KGHSCYRP--RRDGERKRKSVRGCI 208
++KGYV GG D + GVLT+ RV + +G C+R RRDGER+RKSVRGCI
Sbjct: 44 EFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCI 103
Query: 209 GDANLS 226
+LS
Sbjct: 104 VSQDLS 109
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 45.6 bits (103), Expect = 6e-06
Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Frame = +2
Query: 47 QWKGYV-PCCGGNDTAS--L*TGVLTNSRVVSDV-KGHSCYRP--RRDGERKRKSVRGCI 208
++KGYV GG D + GVLT RV + +G C+R RRDGER+RKSVRGCI
Sbjct: 44 EFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCI 103
Query: 209 GDANLS 226
+LS
Sbjct: 104 VSQDLS 109
>03_02_0970 + 12805537-12806253
Length = 238
Score = 29.1 bits (62), Expect = 0.53
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 26 KLMHLLAQWKGYVPCCGG 79
+L HL+ +W GY PC GG
Sbjct: 117 RLGHLVGRWDGYRPCRGG 134
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 28.7 bits (61), Expect = 0.70
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 182 SSHRHDVVCSKSGL*HQRRHGC*SGLLFIGKLCRYRRNTEHNLSIVLEDAS 30
S+HRH S SG +R GC +GLL + L Y R + H + ++A+
Sbjct: 6 SAHRHGASSSSSGAQRRRSVGCMAGLLRL--LSPYHR-SHHRKRLTAKNAA 53
>07_03_0004 -
12260322-12261432,12261691-12261821,12262386-12262491,
12262777-12262875,12262960-12263312,12263593-12263619
Length = 608
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 20 ALKLMHLLAQWKGYVPCCGGNDTASL*TGVLTNSRVVSDVKG 145
+L+ HL A W+ V C G N+ G ++ ++SD+ G
Sbjct: 435 SLRSSHLAASWRKPVSCNGSNNHRRESFGSESDDGIISDLDG 476
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 196 NRLAFPLTVTTWSVARVAFDIRDDTAVS 113
N L P+T+ W++ AFD+ D ++
Sbjct: 145 NYLPVPITIGGWTITGTAFDLHDPRIIA 172
>11_03_0190 -
11350497-11350832,11351926-11352303,11353897-11354181,
11354515-11355327
Length = 603
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 107 VLTNSRVVSDVKGHSCYRPRRDGERKRKSVRGCIG 211
V+T SR ++D + R DG R+RK GC G
Sbjct: 533 VMTGSRAITDFR-------RTDGMRRRKMFVGCYG 560
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 141 LTSETTRLLVRTPVYREAVSLPPQHG 64
L T+L + P REA++LP HG
Sbjct: 979 LAPTITKLYLFNPATREAITLPDGHG 1004
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 126 TRLLVRTPVYREAVSLPP 73
T +TP+Y+E++S+PP
Sbjct: 94 TFFFAKTPLYKESMSIPP 111
>12_02_1137 - 26392399-26392613,26392828-26393233
Length = 206
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 152 CYRPRRDGERKRKSVRGCIGDA 217
C R GE+K + R C+G+A
Sbjct: 128 CVEARDHGEKKGRRRRSCVGEA 149
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +2
Query: 62 VPCCGGNDTASL*TGVLTNSRVVSDVKGHSCYRPRRDGERKRKSVR 199
V C G L G S + GHSC R D +K + R
Sbjct: 344 VACICGQAFCWLCGGATGRDHTWSSISGHSCGRFTEDQSKKTEQAR 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,530,916
Number of Sequences: 37544
Number of extensions: 114114
Number of successful extensions: 276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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