Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G14
(237 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 72 5e-14
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 26 3.1
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 26 3.1
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 26 4.1
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 26 4.1
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 26 4.1
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 25 5.4
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical ... 25 5.4
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 25 5.4
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 72.1 bits (169), Expect = 5e-14
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 4/67 (5%)
Frame = +2
Query: 47 QWKGYVPCCGG-NDTAS--L*TGVLTNSRV-VSDVKGHSCYRPRRDGERKRKSVRGCIGD 214
+WKGYV GG ND + G+LTN RV + KG SCYR R++GERKRKSVRGCI D
Sbjct: 44 EWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVD 103
Query: 215 ANLSGLA 235
AN+S L+
Sbjct: 104 ANMSALS 110
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
K08E7.9 protein.
Length = 1321
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 125 HGC*SGLLFIGKLCRYRRNTEHNLSIVLEDASTSAPIR 12
+GC S +L++ C YR L++++ D T P+R
Sbjct: 983 YGCASSVLYLLNTCAYRM----GLALIITDPPTMQPMR 1016
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 125 HGC*SGLLFIGKLCRYRRNTEHNLSIVLEDASTSAPIR 12
+GC S +L++ C YR L++++ D T P+R
Sbjct: 983 YGCASSVLYLLNTCAYRM----GLALIITDPPTMQPMR 1016
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 223 KVSIPYATTNRLAFPLTVTTWSVARVAFDIRDDTAVSQDS 104
+++I + +R LT+++W+ ++ A D DT VS S
Sbjct: 186 RLNIRFFPYDRQNCTLTISSWTNSKSALDYYADTEVSMQS 225
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 223 KVSIPYATTNRLAFPLTVTTWSVARVAFDIRDDTAVSQDS 104
+++I + +R LT+++W+ ++ A D DT VS S
Sbjct: 186 RLNIRFFPYDRQNCTLTISSWTNSKSALDYYADTEVSMQS 225
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 223 KVSIPYATTNRLAFPLTVTTWSVARVAFDIRDDTAVSQDS 104
+++I + +R LT+++W+ ++ A D DT VS S
Sbjct: 186 RLNIRFFPYDRQNCTLTISSWTNSKSALDYYADTEVSMQS 225
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 197 EQTCVSSHRHDVVCSKSGL*HQRRHGC*SGLLFIGKLC 84
EQT + H H V+ +K L + G+ ++G +C
Sbjct: 242 EQTGLPRHEHAVLITKFDLISINGNSATQGMAYVGNIC 279
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 206 CNHEQTCVSSHRHDVVCSKSG 144
C H Q + ++ H VVC+ SG
Sbjct: 22 CPHSQVALVNNDHPVVCTASG 42
>AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical
protein C31B8.7 protein.
Length = 474
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 230 SLKG*HPLCNHEQTC 186
+LKG HP+CN +Q+C
Sbjct: 372 ALKG-HPVCNEQQSC 385
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 197 EQTCVSSHRHDVVCSKSGL*HQRRHGC*SGLLFIGKLC 84
EQT + H H V+ +K L + G+ ++G +C
Sbjct: 242 EQTGLPRHEHAVLITKFDLISINGNSATQGMAYVGNIC 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,304,642
Number of Sequences: 27780
Number of extensions: 87659
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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