Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G14
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   2.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   2.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   4.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   8.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   8.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      19   8.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   8.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 118 VSQDSCL*GSCVVTAATRNIT 56
           V +++C  G C V  ++ N+T
Sbjct: 117 VGKEACKQGVCTVEVSSENMT 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 118 VSQDSCL*GSCVVTAATRNIT 56
           V +++C  G C V  ++ N+T
Sbjct: 117 VGKEACKQGVCTVEVSSENMT 137


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 184 FPLTVTTWSVARVAFDIRDDTAVSQD 107
           FPL V  ++   +  +IR  +  S+D
Sbjct: 215 FPLVVIIYTYTSILLEIRRRSKKSED 240


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 125  VVSDVKGHSCYRPRR 169
            V+  ++ HS + PRR
Sbjct: 1672 VIRSIRSHSTWDPRR 1686


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 14  VWALKLMHLLAQWKGYVP 67
           VW  K+   L +WK  +P
Sbjct: 194 VWRDKVFITLPKWKDGIP 211


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +2

Query: 56  GYVPCC 73
           GY PCC
Sbjct: 484 GYYPCC 489


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +2

Query: 56  GYVPCC 73
           GY PCC
Sbjct: 537 GYYPCC 542


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 17  WALKLMHLLAQ 49
           W L   HLLAQ
Sbjct: 109 WQLSTAHLLAQ 119


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 167 RDGERKRKS 193
           R+G+RKRKS
Sbjct: 212 RNGKRKRKS 220


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 171 SRRGL*QEWPLTSETTRLLVR 109
           S+RG     PL  ETT  LVR
Sbjct: 28  SQRGNVHNDPLVVETTSGLVR 48


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 171 SRRGL*QEWPLTSETTRLLVR 109
           S+RG     PL  ETT  LVR
Sbjct: 28  SQRGNVHNDPLVVETTSGLVR 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,937
Number of Sequences: 438
Number of extensions: 911
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)