Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G13
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    27   0.31 
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   1.7  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    25   1.7  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    24   3.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    23   5.1  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   6.7  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    23   8.9  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    23   8.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   8.9  

>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 135 KAPTAVKETKPKK*LL*INSVKEKNQKKLETSSLPRAELMQ--PGDP 1
           K+P  VK+ K  K +L    VKEK++K LETS     E ++  PG+P
Sbjct: 113 KSPD-VKDFKLPKDIL---KVKEKSEKPLETSQKVEIETVETKPGEP 155


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 242 LQKLINTLEELVLLPNLWA 186
           L KLI TL+E VL+  LWA
Sbjct: 253 LSKLIYTLDEDVLVDALWA 271


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 13/75 (17%), Positives = 36/75 (48%)
 Frame = -3

Query: 231 YQYIRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAVKETKPKK*LL*INSVKEKNQKK 52
           +QY+   R   +   ++       +  P  VT+   A     P+K ++ +  +  ++ KK
Sbjct: 36  HQYLGRTRLDVETPSLKPSAAGSGSTAPKPVTEREIASTRFMPRKNVIKLTPLAVEHLKK 95

Query: 51  LETSSLPRAELMQPG 7
           +++S+  + ++++ G
Sbjct: 96  MQSSASMKGKMLRIG 110


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 177 KRLKDAAENPDDVTKAPTAVKETKPKK*LL*INSVKEKNQKKLETSSLPRAELMQPGD 4
           +R K A   PD   K PT +  T+ +  LL +  + +     +E   +   E ++P D
Sbjct: 41  RRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHD--HLLMEEEYVQNQERLKPQD 96


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 41  LVSSFFWFFSLTEFIYNNHFF 103
           L++SFF       F+Y+ HFF
Sbjct: 249 LINSFFINVQTNLFVYHPHFF 269


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 159 PHPSVAWLGCPQVWQ 203
           PHP V W  C  V Q
Sbjct: 424 PHPRVRWAACNAVGQ 438


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 150 DFLPHPSVAWLGCPQVW 200
           + +P    A+L CP+VW
Sbjct: 489 EIVPAKERAYLSCPKVW 505


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 204 IAKLVGIRAKRLKDAAENPDDVTKAPTAVKETKPKK 97
           ++ L  IR  +++   E      KAPT   + KP K
Sbjct: 485 LSPLDDIRKSKIRSFYETATVKAKAPTKKSKVKPSK 520


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = +2

Query: 53   FFW--FFSLT--EFIYNNHFFGLVSF 118
            +FW   F+L    FIYN H F  V F
Sbjct: 1444 YFWVTMFALVICPFIYNPHQFSFVDF 1469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 960,924
Number of Sequences: 5004
Number of extensions: 15034
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)