Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G13
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393...    27   2.1  
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    27   2.7  
01_01_0719 - 5590272-5590485,5590849-5590910,5590990-5591202,559...    26   3.6  
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762...    26   4.8  
11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493...    25   6.3  
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    25   6.3  
01_01_0724 - 5662323-5662536,5662891-5662952,5663037-5663252,566...    25   6.3  
06_03_1140 - 27942927-27942986,27943134-27943328                       25   8.4  
03_02_0178 + 6195402-6199158,6199438-6200003                           25   8.4  
01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022     25   8.4  
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    25   8.4  

>02_05_0023 +
           25138709-25138823,25139013-25139197,25139268-25139335,
           25139729-25140041,25140621-25140962,25140990-25141079
          Length = 370

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 101 FGLVSFTAVGALVTSSGFSAASF---SRLARMPTSLAIE 208
           FGL++ T++G L  S GF++  F   ++LA +P ++ +E
Sbjct: 76  FGLLNGTSIGLLNLSLGFNSIGFYQMTKLAIIPFTVMLE 114


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 236 KLINTLEELVLLPNLWASEPSD*RMRQKILMMSLKHL 126
           +++N L ++    ++W+S+      R  I+ M+LKHL
Sbjct: 366 EVLNLLVDICTKQSVWSSQVHTLTARPTIMFMNLKHL 402


>01_01_0719 -
           5590272-5590485,5590849-5590910,5590990-5591202,
           5591223-5591295,5591664-5591863,5592484-5592633
          Length = 303

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 11  GCINSARGRELVSSFFWFFSLTEFIYNNHFFGLVSFTAVGALV 139
           G +  A   E V SFF  F ++    +N   G ++  AVGA V
Sbjct: 183 GSMAQAAALEFVISFFLMFVVSSVATDNRAIGELAGLAVGATV 225


>09_04_0713 -
           19675437-19675551,19675872-19676017,19676226-19676259,
           19676333-19676473,19676860-19676924,19677022-19677108,
           19677186-19677254,19677457-19677548,19677781-19677853,
           19678129-19678205,19678490-19678684,19678804-19678861,
           19679423-19679517,19680071-19680191
          Length = 455

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  FFGLVSFTAVGALVTSSGFSAASFSRL-ARMPTSLAI 205
           F GL     V  L+TS+GFS++  +R     PTS ++
Sbjct: 14  FVGLALGQFVSLLITSTGFSSSELARRGVNAPTSQSL 50


>11_06_0124 +
           20348269-20348413,20348753-20348874,20349210-20349318,
           20349401-20349440,20350245-20350334,20350388-20350547,
           20350656-20350795,20351390-20351492,20351667-20352178,
           20352267-20352543
          Length = 565

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  GCINSARGRELVSSFFWFFSLTEFIYN 91
           GC+   R  E +S   W FSL + + N
Sbjct: 154 GCLKKVRVGEEISLVSWIFSLMDVVTN 180


>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 254 G*EELQKLINTLEELVLLPNLWASEP 177
           G E LQ L N++++     N+W +EP
Sbjct: 409 GAESLQDLFNSMDDSNARNNVWGNEP 434


>01_01_0724 -
           5662323-5662536,5662891-5662952,5663037-5663252,
           5664521-5664815,5665808-5665903,5667381-5667540,
           5667837-5667903
          Length = 369

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 11  GCINSARGRELVSSFFWFFSLTEFIYNNHFFGLVSFTAVGALV 139
           G +  A   E V SFF  F ++    +N   G ++  AVGA V
Sbjct: 249 GSMAQAAALEFVISFFLMFVVSGVATDNRAIGELAGLAVGATV 291


>06_03_1140 - 27942927-27942986,27943134-27943328
          Length = 84

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 223 H*RSSFYCQTCGHPSQATEGCGR 155
           H  SSF C T G  S A  G GR
Sbjct: 15  HFASSFVCLTVGVTSSALHGIGR 37


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 208  FYCQTCGHPSQ 176
            F+C  CGHPS+
Sbjct: 1170 FHCAACGHPSE 1180


>01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022
          Length = 342

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 205 YCQTCGHPSQATEGCGRKS 149
           YC+ CG        CGRKS
Sbjct: 304 YCKQCGGHGHYNSTCGRKS 322


>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 83  IYNNHFFGLVSFTAVGALVTSSGF 154
           I N H++  VSFT +   V ++G+
Sbjct: 101 ITNKHYWASVSFTGIAGFVLAAGW 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,107,537
Number of Sequences: 37544
Number of extensions: 89871
Number of successful extensions: 275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)