Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G13
(257 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein. 36 0.031
BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein. 36 0.031
BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein. 36 0.031
BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein. 36 0.031
AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13 p... 36 0.031
AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13 p... 35 0.041
BC109211-1|AAI09212.1| 632|Homo sapiens gamma-aminobutyric acid... 27 8.2
BC109210-1|AAI09211.1| 632|Homo sapiens gamma-aminobutyric acid... 27 8.2
AF189259-1|AAF70380.1| 632|Homo sapiens GABA-A receptor theta s... 27 8.2
AF144648-1|AAD51172.1| 627|Homo sapiens GABA-A receptor theta p... 27 8.2
>X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAENPDDVTK 133
KA+ +R AR+ A+L GIRAKR K+AAE DV K
Sbjct: 177 KAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13
protein.
Length = 65
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3
Query: 237 KAYQYIRGARSIAKLVGIRAKRLKDAAE 154
KA+ +R AR+ A+L GIRAKR K+AAE
Sbjct: 34 KAFASLRMARANARLFGIRAKRAKEAAE 61
>BC109211-1|AAI09212.1| 632|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, theta protein.
Length = 632
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 14 CINSARGRELVSSFFWFFSLTEFIYNNHFF 103
CI + LV FF F SL E++Y N+ F
Sbjct: 324 CIKAIDIYILVCLFFVFLSLLEYVYINYLF 353
>BC109210-1|AAI09211.1| 632|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, theta protein.
Length = 632
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 14 CINSARGRELVSSFFWFFSLTEFIYNNHFF 103
CI + LV FF F SL E++Y N+ F
Sbjct: 324 CIKAIDIYILVCLFFVFLSLLEYVYINYLF 353
>AF189259-1|AAF70380.1| 632|Homo sapiens GABA-A receptor theta
subunit protein.
Length = 632
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 14 CINSARGRELVSSFFWFFSLTEFIYNNHFF 103
CI + LV FF F SL E++Y N+ F
Sbjct: 324 CIKAIDIYILVCLFFVFLSLLEYVYINYLF 353
>AF144648-1|AAD51172.1| 627|Homo sapiens GABA-A receptor theta
protein.
Length = 627
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 14 CINSARGRELVSSFFWFFSLTEFIYNNHFF 103
CI + LV FF F SL E++Y N+ F
Sbjct: 319 CIKAIDIYILVCLFFVFLSLLEYVYINYLF 348
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,906,352
Number of Sequences: 237096
Number of extensions: 546357
Number of successful extensions: 1175
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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