Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G13
(257 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 29 0.60
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 29 0.60
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 27 1.8
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 26 3.2
Z80215-15|CAJ30222.1| 99|Caenorhabditis elegans Hypothetical p... 26 4.2
Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical pr... 26 4.2
AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm rec... 25 5.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 25 7.4
U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical pr... 25 9.8
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 28.7 bits (61), Expect = 0.60
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 183 RAKRLKDAAENPDDVTKAPTAVKETKPKK*LL*INSVKEKNQKKLETSSLPRAE---LMQ 13
RAK+L D P T A T+ K LL + V ++ Q+ +ETSSLP +E +
Sbjct: 144 RAKQLADQLGLPYFETSACTSTNVEKSVDCLL--DLVMQRIQQSVETSSLPLSECRGVSL 201
Query: 12 PGDP 1
GDP
Sbjct: 202 DGDP 205
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 28.7 bits (61), Expect = 0.60
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 183 RAKRLKDAAENPDDVTKAPTAVKETKPKK*LL*INSVKEKNQKKLETSSLPRAE---LMQ 13
RAK+L D P T A T+ K LL + V ++ Q+ +ETSSLP +E +
Sbjct: 144 RAKQLADQLGLPYFETSACTSTNVEKSVDCLL--DLVMQRIQQSVETSSLPLSECRGVSL 201
Query: 12 PGDP 1
GDP
Sbjct: 202 DGDP 205
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 216 GARSIAKLVGI--RAKRLKDAAENPDDVTKAPTAVKET 109
G+ +L+ + A R ++AENPDDVT K T
Sbjct: 1331 GSNECGRLIRLFCHAVRFSESAENPDDVTSPVYQKKST 1368
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 162 AAENPDDVTKAPTAVKETKPKK 97
+A+ P+D +PTAVK TKP++
Sbjct: 23 SADEPED-EPSPTAVKSTKPQR 43
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 162 AAENPDDVTKAPTAVKETKPKK 97
+A+ P+D +PTAVK TKP++
Sbjct: 22 SADEPED-EPSPTAVKSTKPQR 42
>Z80215-15|CAJ30222.1| 99|Caenorhabditis elegans Hypothetical
protein C36B1.14 protein.
Length = 99
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 226 IH*RSSFYCQTCGHPSQATEGCGRK 152
IH S YC TC + CG+K
Sbjct: 63 IHQPGSHYCSTCAYQKGICAMCGKK 87
>Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 59 WFFSLTEFIYNNHFFGLVSFTAVGALVTSSGFSA 160
WF+ + E + N F L+ F + V GFSA
Sbjct: 797 WFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSA 830
>Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 59 WFFSLTEFIYNNHFFGLVSFTAVGALVTSSGFSA 160
WF+ + E + N F L+ F + V GFSA
Sbjct: 797 WFWEVIETMTNQERFDLLLFVTGSSSVPFEGFSA 830
>AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm
receptor protein 41 protein.
Length = 335
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 35 RELVSSFFWFFSLTEFIYNNHFFGLVSFTAVGALVTSSGF 154
+ + S+ + SL F Y +F F +GALV +GF
Sbjct: 63 KPFIHSYNGYKSLLYFSYGEGWFEASLFVRLGALVMYAGF 102
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 183 RAKRLKDAAENPDDVTKAPTAVKETKPKK*LL*INSVKEKNQKKLETSSLPRAELMQ 13
+ K + E D K A+ + PKK NS+++ N+ +ET+ + R + M+
Sbjct: 433 KEKEAEREKEKAKDREKKIAALSKPIPKKKPETTNSLRQANRTHMETAVVARIDRMK 489
>U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical
protein F10D7.2 protein.
Length = 445
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 5 SPGCINSARGRELVSSFFWFFSLT 76
S GC+ A G + S+FFW T
Sbjct: 393 SLGCLARALGPVISSTFFWLLGAT 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,361,930
Number of Sequences: 27780
Number of extensions: 85879
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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