Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G13
         (257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.80 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   4.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   4.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   4.3  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    20   5.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   5.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   7.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 0.80
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -3

Query: 231 YQYIRGARSIAKLVGI--RAKRLKDAAENPDDVTK--APTAVKETKPKK 97
           +Q ++G     K VG   R K L    + P +V K  +P + KET PKK
Sbjct: 746 HQQLQGVAKNKKNVGSMSRNKALLPVIK-PANVNKEQSPNSTKETTPKK 793



 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  KEKNQKKLETSSLPRAEL 19
           +E+N KKL+  S+   +L
Sbjct: 323 EEENDKKLDLDSIDMMQL 340


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 98  FFGLVSFTAVG 130
           FFGLVS TA+G
Sbjct: 315 FFGLVSDTALG 325


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +2

Query: 56  FWFFSLTEFIYNNHFFGLVSFTAVGALVTSSG 151
           +W  + T F+ NN     +  T     ++S G
Sbjct: 348 YWISTTTSFVLNNRAGRFLILTESDTKLSSQG 379


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 163 CGRKS**CH*STYSCEG 113
           CG ++   H   YSCEG
Sbjct: 113 CGDRASGKHYGVYSCEG 129


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 163 CGRKS**CH*STYSCEG 113
           CG ++   H   YSCEG
Sbjct: 113 CGDRASGKHYGVYSCEG 129


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 163 CGRKS**CH*STYSCEG 113
           CG K+   H   +SCEG
Sbjct: 12  CGDKASGFHYGVHSCEG 28


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 163 CGRKS**CH*STYSCEG 113
           CG K+   H   +SCEG
Sbjct: 70  CGDKASGFHYGVHSCEG 86


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 98  FFGLVSFTAVG 130
           FFGLV+ +A+G
Sbjct: 319 FFGLVNNSAIG 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,200
Number of Sequences: 438
Number of extensions: 1016
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)