Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G12
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    87   1e-18
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    87   1e-18
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    28   0.39 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   1.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   2.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   3.6  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   3.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    24   6.3  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    24   6.3  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   6.3  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    21   7.8  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   8.3  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.3  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +2

Query: 149 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 328
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 329 VMHGRNNGKKL 361
           +M+GRNNGKKL
Sbjct: 76  MMNGRNNGKKL 86


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +2

Query: 149 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 328
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 329 VMHGRNNGKKL 361
           +M+GRNNGKKL
Sbjct: 76  MMNGRNNGKKL 86


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 208 LQRHVRYLNVITTPSPKKFDFGNISRLW 125
           LQ+H++YL  +  P P  F   + SR W
Sbjct: 31  LQKHLKYLTKMLDPLPSPFTVLDASRAW 58


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 134 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 271
           ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 9   ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 107 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 247
           V+NM + +P  I   KL  + +  + ++    L ++  ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 244 IFCILLFYRNIILQRHVRYLN 182
           I C+L+  RNI L+  + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  KKSPTRAAWLWTTCHYHSRLIF 143
           K +P R   LW +CH++  +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 66  SSAIFHTFIRNLRIITSRCP 7
           SSA  +  +RN++II  +CP
Sbjct: 295 SSATQYVILRNIQIILEQCP 314


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 275 KRFRKAQCPIVERLTNSLV-MHGR 343
           KRF  A CP+ E L+ S+V + GR
Sbjct: 112 KRFGHAYCPLDEALSRSVVDLSGR 135


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +2

Query: 191 SDMSLQDYISVKEKYAKYLPHS 256
           SDM ++ + ++K +Y+K +P++
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNT 727


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 21.0 bits (42), Expect(2) = 7.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 102 WLWTTCHYHSRLIFPKSNFLGDGVV 176
           W  +    H  ++FP S  + +G+V
Sbjct: 257 WRCSDFLLHQNILFPPSTLVQNGIV 281



 Score = 21.0 bits (42), Expect(2) = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 LCRIIFR*KRSMQNIYHILLAGTLTNDSVKLSALLW 308
           L R +FR  RS  N     L   + ++S+  S  LW
Sbjct: 311 LRRFVFRSPRSASNYEFSNLRRLMVSESLYSSKSLW 346


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 94  RVGDFFGPVLLSHISHFYSQFTNYNLALSL 5
           +V  FF P     IS   S+ T  NL LSL
Sbjct: 164 QVQSFFSPAAREAISSLKSRTTTSNLLLSL 193


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 211 ILQRHVRYLNVITTPSPKKFDFGNISRL 128
           IL++   +  +I   S +KFDF N  R+
Sbjct: 3   ILEKKNIFFKIIHIKSSRKFDFSNAIRI 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,660
Number of Sequences: 5004
Number of extensions: 30500
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)