Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G12
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 122 8e-29
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 30 0.57
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 29 1.3
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 29 1.3
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 1.7
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 1.7
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 26 7.0
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 122 bits (294), Expect = 8e-29
Identities = 61/99 (61%), Positives = 70/99 (70%)
Frame = +2
Query: 65 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 244
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 245 LPHSAGRYAHKRFRKAQCPIVERLTNSLVMHGRNNGKKL 361
LPHSAGR+ +RFRKA CPIVERL NSL+MHGRNNGKKL
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKL 93
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 29.9 bits (64), Expect = 0.57
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 150 SNFLGDGVVMTFKYRTCLCRIIF 218
SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 280 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 104
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 103 HAARVGDFFGPVLL 62
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 280 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 104
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 241 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 300
Query: 103 HAARVGDFFGPVLL 62
VGD F P+LL
Sbjct: 301 VQEAVGDVFNPLLL 314
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 280 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 104
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 103 HAARVGDFFGPVLL 62
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 66 RTGPKKSPTRAAWLWTTCHYHS 131
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 66 RTGPKKSPTRAAWLWTTCHYHS 131
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 289 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 167
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 289 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 167
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 85 DFFGPVLLSHISHFYSQFTNYNLAL 11
DF P L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269
>Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical
protein F21D5.9 protein.
Length = 185
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 290 AQCPIVERLTNSLVMHGRNNGKK 358
A C V RLT LV H RNN +K
Sbjct: 152 AVCGAVFRLTGDLVQHMRNNHRK 174
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 142 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 44
+ S W WH+ H DFFG S S F
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 278 VCERTCQQNVVNILHTSLLP 219
V E TC Q V +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 278 VCERTCQQNVVNILHTSLLP 219
V E TC Q V +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 278 VCERTCQQNVVNILHTSLLP 219
V E TC Q V +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,377,381
Number of Sequences: 27780
Number of extensions: 171581
Number of successful extensions: 402
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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