Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G11
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 260 6e-71
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 155 3e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 147 6e-37
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 122 3e-29
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 80 1e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 79 3e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 3e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 2e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.037
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 1.8
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 1.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 3.2
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 4.3
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 4.3
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 4.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 5.6
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 5.6
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 5.6
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 7.3
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 24 7.4
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 24 9.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 9.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.8
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 24 9.8
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 9.8
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 260 bits (637), Expect = 6e-71
Identities = 118/128 (92%), Positives = 122/128 (95%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
H G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 40 HHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 99
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLD GDGV
Sbjct: 100 EHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 160 THTVPIYE 167
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 155 bits (375), Expect = 3e-39
Identities = 69/129 (53%), Positives = 95/129 (73%), Gaps = 1/129 (0%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAP 186
H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L P
Sbjct: 44 HERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLP 103
Query: 187 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDG 366
EEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+CGDG
Sbjct: 104 EEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDG 163
Query: 367 VSHTVPIYE 393
++H+VPIY+
Sbjct: 164 LTHSVPIYD 172
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 147 bits (356), Expect = 6e-37
Identities = 62/118 (52%), Positives = 91/118 (77%)
Frame = +1
Query: 40 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 219
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 220 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTVPIYE 393
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+D GDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYE 167
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 122 bits (293), Expect = 3e-29
Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 9/138 (6%)
Frame = +1
Query: 7 GHQGVMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 183
GH D ++G++A K +L YPI HG + NWD ME+ W + + LR
Sbjct: 61 GHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCE 120
Query: 184 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------T 339
PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 340 GIVLDCGDGVSHTVPIYE 393
G V+D GDGV+H +P+ E
Sbjct: 181 GTVVDSGDGVTHIIPVAE 198
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 79.8 bits (188), Expect = 1e-16
Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 31 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 207
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 208 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDCGDGVSHTV 381
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 382 PI 387
P+
Sbjct: 181 PV 182
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.6 bits (185), Expect = 3e-16
Identities = 38/103 (36%), Positives = 56/103 (54%)
Frame = +1
Query: 85 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 264
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 265 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTVPIYE 393
E+ PA Y+A Q + +ASG+ T ++D G S IY+
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYD 165
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 3e-14
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 183
+ GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V
Sbjct: 39 YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVN 98
Query: 184 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGD 363
P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 364 GVSHTVPIYE 393
+ P+ +
Sbjct: 159 DNASVTPVVD 168
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 52.4 bits (120), Expect = 2e-08
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +1
Query: 100 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 267
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 268 TFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTVPIYE 393
P +A + ++ LYA G G+V+D G + PI +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILD 213
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.037
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 160 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 303
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 202 LLTEAPLNPKANREKMTQIMFETFN 276
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 155 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 241
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 362 SPQSST-IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFS 240
+P S+ + +V D S+S Y+A +K +N+IC+++S
Sbjct: 44 NPDSNDDVSLVLVDTQSDSNE--REYLAAEIKKANVICLVYS 83
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 81 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 191
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 196 GAPRELHAAHCRRCDARSSP 137
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 383 GTVWDTPSPQSSTIPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLLAL 228
G+ PS IP++ P+ S + I ++ L VS I FS+L +
Sbjct: 493 GSTKTLPSIGKKPIPLLDPNPISSTPISITFWVIMFLSVSFTIVTFFSILRI 544
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 19 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 105
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 146 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPT 238
S T S +S + R ++S LPSTP PT
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPT 429
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 226 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
P+ E ++I F + Y+AI A+L +YA R +++ G GV
Sbjct: 44 PRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 207 HRXXXXXXXXXREDDTDYVRDLQHTRHVRSYPGRALTV 320
H +ED+T D+ R++R +PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 82 ILTLKYPIEHGIVTN 126
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 7.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 121 TNWDDMEKIWHHTFYNELRVAPEEHP 198
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 291 VHGGCVEGLEHNLCHLLSVGFGVEGSFGEQDWVLL 187
+ G VEG L LS+ FG+ +WV L
Sbjct: 324 IRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVAL 358
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 114 AVFDGVFECEDTPLALCLI--TYVGVLLTHADH 22
+V D +FEC D P+ + +G+ H +H
Sbjct: 298 SVLDALFECFDVPVVQYMYQENIIGICNEHFEH 330
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 72 QEGYPHTQIPHRTRHRH 122
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 166 CRRCDARSSPYRPSW*RCRV 107
C+ CD + YR S +CRV
Sbjct: 161 CQNCDILNYSYRESCFKCRV 180
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +1
Query: 115 IVTNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 228
++ + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 128 QLVTMPCSMGYLSVRIPLLLCASSPT*ESF 39
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 97 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,707
Number of Sequences: 5004
Number of extensions: 38762
Number of successful extensions: 116
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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