Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G11
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 273 3e-74
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 273 3e-74
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 273 3e-74
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 273 3e-74
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 273 3e-74
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 273 3e-74
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 273 3e-74
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 273 3e-74
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 273 3e-74
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 269 4e-73
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 264 2e-71
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 175 1e-44
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 144 3e-35
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 128 2e-30
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 103 6e-23
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 103 6e-23
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 103 6e-23
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 97 3e-21
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 95 2e-20
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 38 0.003
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 38 0.003
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 38 0.003
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 33 0.098
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 32 0.17
U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir relat... 31 0.23
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein. 29 1.2
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 29 1.2
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 29 1.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 2.1
Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 4.9
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 27 4.9
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 26 8.5
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 26 8.5
U80030-2|AAG24161.2| 362|Caenorhabditis elegans Serpentine rece... 26 8.5
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 26 8.5
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 26 8.5
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 26 8.5
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 273 bits (670), Expect = 3e-74
Identities = 126/128 (98%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 273 bits (670), Expect = 3e-74
Identities = 126/128 (98%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 27 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 86
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 87 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 146
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 147 THTVPIYE 154
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 273 bits (669), Expect = 3e-74
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGV 160
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 161 THTVPIYE 168
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 269 bits (660), Expect = 4e-73
Identities = 123/128 (96%), Positives = 126/128 (98%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 189
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR+APE
Sbjct: 40 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPE 99
Query: 190 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGV 369
EHPVLLTEAPLNPK+NREKMTQIMFETFNTPAMYV IQAVLSLYASGRTTGIVLD GDGV
Sbjct: 100 EHPVLLTEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGV 159
Query: 370 SHTVPIYE 393
+HTVPIYE
Sbjct: 160 THTVPIYE 167
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 264 bits (646), Expect = 2e-71
Identities = 121/124 (97%), Positives = 123/124 (99%)
Frame = +1
Query: 22 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 201
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 202 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTV 381
LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG+VLD GDGV+HTV
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTV 120
Query: 382 PIYE 393
PIYE
Sbjct: 121 PIYE 124
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 175 bits (425), Expect = 1e-44
Identities = 76/124 (61%), Positives = 99/124 (79%), Gaps = 1/124 (0%)
Frame = +1
Query: 19 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEH 195
VM G D ++G +A+S RG+ +++YP+EHGIV NW DMEKIW + F ++L++ PEEH
Sbjct: 46 VMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEH 105
Query: 196 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSH 375
PVLLT+APLNP NRE+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+VLD GDGV+H
Sbjct: 106 PVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVTH 165
Query: 376 TVPI 387
VPI
Sbjct: 166 AVPI 169
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 144 bits (348), Expect = 3e-35
Identities = 65/119 (54%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Frame = +1
Query: 40 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEA 216
KD VG+E R +L + YP+++GIV NWDDM +W HTF E L + P+E +LLTE
Sbjct: 53 KDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEP 112
Query: 217 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTVPIYE 393
PLNP +NREKM Q+MFE + ++YVA+QAVL+LYA G TG+V+D GDGV+H P+YE
Sbjct: 113 PLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYE 171
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 128 bits (308), Expect = 2e-30
Identities = 63/132 (47%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Frame = +1
Query: 19 VMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 195
V G+ D ++GDEA S T+KYPI HGIV +WD ME+ W + LR PE+H
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
Query: 196 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVL 351
LLTE PLN NRE +IMFE+FN P +Y+A+QAVL+L AS + TG+V+
Sbjct: 116 FFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVI 175
Query: 352 DCGDGVSHTVPI 387
D GDGV+H +P+
Sbjct: 176 DSGDGVTHCIPV 187
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 103 bits (246), Expect = 6e-23
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 147
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 103 bits (246), Expect = 6e-23
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 147
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 103 bits (246), Expect = 6e-23
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 147
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +1
Query: 10 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 138
HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM
Sbjct: 41 HQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/97 (42%), Positives = 64/97 (65%)
Frame = +1
Query: 103 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 282
++ G++ +W+ EKI H++ N L P EHPVL +E+ N +A REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 283 AMYVAIQAVLSLYASGRTTGIVLDCGDGVSHTVPIYE 393
A Y++ VLS +A GRT G+++D G + VP+++
Sbjct: 154 AYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFD 190
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 37 QKDSYVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 210
+K +V E + +L Y PIE G V NWD ++IW TF + V + LT
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALT 97
Query: 211 EAPLNPKANREKMTQIMFETF 273
+ A + ++I+F+ F
Sbjct: 98 DNNYLIPALPDVSSEILFDYF 118
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 169 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 348
EL+V P ++ VLL+ P ++ QI E + + Q L LYA TTG+V
Sbjct: 266 ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYAYDVTTGVV 325
Query: 349 LDCGDGVSHTVPIYE 393
+D G+ V + VP+ +
Sbjct: 326 VDIGERV-NIVPVID 339
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 37 QKDSYVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 210
+K +V E + +L Y PIE G V NWD ++IW TF + V + LT
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALT 97
Query: 211 EAPLNPKANREKMTQIMFETF 273
+ A + ++I+F+ F
Sbjct: 98 DNNYLIPALPDVSSEILFDYF 118
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 368 TPSPQSSTIPVVRPDAYSESTAWIATYMAGVL 273
TP P SST+PVV P ++ T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.17
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +2
Query: 170 SCV*LPRSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPP--CT*LSRPCSHCTRPVVPP 340
+C PR + SC P +P P P C PS P C P + C P PP
Sbjct: 69 NCCGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPP 127
>U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir related
protein 2.4 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.23
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = +1
Query: 55 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 234
G + K TL + E + + D + K W T + L + + + PL+ K+
Sbjct: 183 GRSCRGKLRDATLDWDTEISL-NHLDRIRKAWKQTSHL-LCIGTSLEIIPMGSLPLDAKS 240
Query: 235 NREKMTQIMF-ETFNTPAMYVAIQA--VLSLYASGRTTGIVLDCGDGVSHTVPI 387
K T I + ET + + AI A L LY+ G+ +D GD + VPI
Sbjct: 241 KGIKTTTINYQETAHEKIVETAIHADVKLILYSLCNALGVNVDLGDDLPDEVPI 294
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 188 RSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 334
+S+ PS P P++ R R S+PS + CT L+ PC C + ++
Sbjct: 173 KSSAEIFSHFPSEPSPSKPRATREGSQPSDYTYCTYLT-PCILCEKALL 220
>Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein.
Length = 722
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 188 RSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 334
+S+ PS P P++ R R S+PS + CT L+ PC C + ++
Sbjct: 173 KSSAEIFSHFPSEPSPSKPRATREGSQPSDYTYCTYLT-PCILCEKALL 220
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 188 RSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 334
+S+ PS P P++ R R S+PS + CT L+ PC C + ++
Sbjct: 173 KSSAEIFSHFPSEPSPSKPRATREGSQPSDYTYCTYLT-PCILCEKALL 220
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 188 RSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 334
+S+ PS P P++ R R S+PS + CT L+ PC C + ++
Sbjct: 173 KSSAEIFSHFPSEPSPSKPRATREGSQPSDYTYCTYLT-PCILCEKALL 220
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 191 STQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPVSCWIAAMVY 370
+++S SP P P P L P PP +S+ + PV PP + +M+
Sbjct: 1330 TSRSSSPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMIL 1389
Query: 371 PTQYP 385
P P
Sbjct: 1390 PPPPP 1394
>Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 185 PRSTQSCSPKLPSTPKPTE 241
P STQ+ P+LP P+P E
Sbjct: 21 PMSTQTSEPQLPDVPEPNE 39
>Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 185 PRSTQSCSPKLPSTPKPTE 241
P STQ+ P+LP P+P E
Sbjct: 89 PMSTQTSEPQLPDVPEPNE 107
>Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 185 PRSTQSCSPKLPSTPKPTE 241
P STQ+ P+LP P+P E
Sbjct: 21 PMSTQTSEPQLPDVPEPNE 39
>Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 185 PRSTQSCSPKLPSTPKPTE 241
P STQ+ P+LP P+P E
Sbjct: 89 PMSTQTSEPQLPDVPEPNE 107
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 97 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 198
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 452 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 97 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 198
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 493 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 191 STQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPP 340
ST + P+ P + R L SR T P C +R + TR VPP
Sbjct: 327 STTGAARTRPAIPAVSAPR--ALTSRAPTGPACPTTTRSAAPATRTAVPP 374
>AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical
protein H23L24.4 protein.
Length = 368
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -1
Query: 320 YSESTAWIATYMAGVLKVSNIICVIFSLLA 231
Y S+ TY+ +L++S+II ++FS+++
Sbjct: 52 YKRSSTCTRTYIFVILRLSSIILLVFSIIS 81
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 124 NWDDMEKIWHHTFYNE--LRVAPEEHPV 201
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 145 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 279
I ++T N L ++ + + E NP N +KM I+ E F T
Sbjct: 135 ILNNTKLNNLNISSLSNSNNIVEIKNNPNLNLQKMCSIIHEVFFT 179
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 145 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 279
I ++T N L ++ + + E NP N +KM I+ E F T
Sbjct: 135 ILNNTKLNNLNISSLSNSNNIVEIKNNPNLNLQKMCSIIHEVFFT 179
>U80030-2|AAG24161.2| 362|Caenorhabditis elegans Serpentine
receptor, class w protein121 protein.
Length = 362
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 329 PDAYSESTAWIATYMAGVLKVSNIICVIFSLL 234
P S TAWI GV + N + IFS+L
Sbjct: 286 PYGLSIGTAWIFLLAPGVYNILNQLASIFSML 317
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 91 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 243
L Y + + N DM+ N +R A EE + + + P PK++R+
Sbjct: 130 LLYANDQILEVNGLDMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 180
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 91 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 243
L Y + + N DM+ N +R A EE + + + P PK++R+
Sbjct: 130 LLYANDQILEVNGLDMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 180
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 91 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 243
L Y + + N DM+ N +R A EE + + + P PK++R+
Sbjct: 169 LLYANDQILEVNGLDMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,184,219
Number of Sequences: 27780
Number of extensions: 230105
Number of successful extensions: 898
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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