Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G10
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 31 0.13
11_06_0074 - 19821699-19823702 29 0.39
04_01_0032 + 387228-387374,388775-388934,389023-389156,389375-38... 29 0.69
04_01_0166 - 1861750-1862181,1862317-1863873 28 0.91
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 28 0.91
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 28 0.91
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 27 1.6
11_06_0077 - 19843056-19844984 27 1.6
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 27 1.6
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 2.8
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080 27 2.8
01_07_0172 + 41704905-41706170 27 2.8
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 27 2.8
04_01_0260 - 3506672-3508981 26 3.7
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 26 4.9
09_03_0086 + 12230402-12231526 26 4.9
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 4.9
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 26 4.9
06_03_0846 - 25328224-25330613,25330716-25330794 25 6.4
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39... 25 6.4
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 25 8.5
06_03_1179 + 28209397-28209448,28211803-28212167 25 8.5
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 25 8.5
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 25 8.5
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 110 SEDNADDKKDALEGILSEIVEKDISMHVEEILEKWEL 220
S+D+ + + LEG+++ IV ++ S+ +EE+L + L
Sbjct: 390 SKDHVKVQGEILEGLVARIVSRESSVQIEEVLRNYPL 426
>11_06_0074 - 19821699-19823702
Length = 667
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 71 EGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMHVE 196
+G FG G+LD ED+ K + G L E ++I +H +
Sbjct: 49 KGGFGEVFRGVLDDEDDVVAVKRYIRGDLREEFMEEIRIHAQ 90
>04_01_0032 +
387228-387374,388775-388934,389023-389156,389375-389584,
389897-390007,390848-391108
Length = 340
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 44 EKLRSLKTDEGVFGSYISGILDSEDNA 124
EKL SLK EGV G YIS +D D A
Sbjct: 249 EKLESLKLGEGVKGVYISVDVDCLDPA 275
>04_01_0166 - 1861750-1862181,1862317-1863873
Length = 662
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 8 AAAVSEFEPWLIEKLRSLKTDEGV 79
AAA ++ EP+L+E++R LK +G+
Sbjct: 373 AAAATDGEPFLVEEMRVLKETKGI 396
>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 2 HEAAA-VSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADD--KKDALEGILSEIVE 172
HEA +S+F+ W E+L+ + ++ + G+ S DD K+ E E +
Sbjct: 1178 HEAETQLSQFKAWKREELKKITKEKNALAERLKGVEASRKRVDDEFKRFVAEAQTREEIR 1237
Query: 173 KDI 181
K +
Sbjct: 1238 KSL 1240
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 44 EKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMHVEEILEK 211
E LRS+K +EG +I+ + + + + DDK +L+ + DI ++ K
Sbjct: 73 EALRSIKLEEGRLLIHIADLYEMKRSLDDKITSLKAAVKSSPSADILRRIKSTRTK 128
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 74 GVFGSYISGILDSEDNA 124
GVFGS+ GI+DS NA
Sbjct: 143 GVFGSFTKGIVDSSKNA 159
>11_06_0077 - 19843056-19844984
Length = 642
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 71 EGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMHVE 196
+G FG G+LD ED+ K + G L + +++ +H +
Sbjct: 33 KGGFGEIFRGVLDDEDDMVAVKRYIRGDLRDEFMEEVRIHAQ 74
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +3
Query: 132 KKMPW-KVYYRR*WKKT 179
K MPW KVYYR W+ T
Sbjct: 248 KSMPWAKVYYRSCWRNT 264
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 20 SEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADD 130
S E WLI KLR K D Y SG L S D+
Sbjct: 547 SHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDE 583
>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
Length = 608
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 107 DSEDNADDKK--DALEGILSEIVEKDISMH--VEEILEKWELCRPNDEE 241
D E + +K EG++ ++ EK +M E LEKWE R EE
Sbjct: 231 DGEGGSSTRKLMAMFEGMMRQVTEKQDAMQRVFLETLEKWEAERTEREE 279
>01_07_0172 + 41704905-41706170
Length = 421
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 2 HEAAAVSEFEPWLIEKLRS 58
H AAA S PW++ +LRS
Sbjct: 4 HPAAAASPTPPWMVRELRS 22
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 29 EPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMH 190
E W I S+ +G FG GILD K+ + G L E K++ +H
Sbjct: 147 EVWHITNGYSIMLGKGAFGEVYKGILDDGCPVAVKR-YIHGNLKEEFAKEVIVH 199
>04_01_0260 - 3506672-3508981
Length = 769
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 104 LDSEDNADDKKDALEGILSEIVEKDISMHV 193
LD + + DD+++AL G E + K +SM +
Sbjct: 226 LDKKSDDDDEQEALSGTWDETLYKVVSMEL 255
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 35 WLIEKLRSLKTDEGVFG-SYISGILDSEDNA 124
WL+ KL+ LK D G G + G+L S+ NA
Sbjct: 309 WLVTKLKELK-DSGCIGVVHEIGVLSSDRNA 338
>09_03_0086 + 12230402-12231526
Length = 374
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 32 PWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKD 139
P+L LRSL+ FGS + S D+ DD D
Sbjct: 180 PFLGGALRSLRLKVRCFGSLHGAVESSTDDEDDDDD 215
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 95 SGILDSEDNADDKKDALEGILSEI---VEKDISMHVEEILEKWELCRPNDEEP 244
+G D+ D +++ GI++E +KD++ + ++E+W RP P
Sbjct: 342 TGTGDAGDKGNEENPKKFGIVTEEDSKADKDVAEKISSMIEEWLKTRPPPPPP 394
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 110 SEDNADDKKDALEGILSEIVEKDISMHVEEILEKW 214
S+ N + KK E EI +KD S V++++EK+
Sbjct: 898 SDSNVERKKMENEVKRMEIEQKDCSSKVDKLVEKY 932
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 80 FGSYISGILDSEDNADDKKD 139
F S ISG+ D E+N+D++ D
Sbjct: 344 FRSQISGLKDREENSDNQTD 363
>05_01_0055 -
390371-390457,390637-390715,390804-390856,390951-391105,
391216-391422,391518-391658,392044-392202,392296-392476,
393153-393252,393321-393470,393581-393705,394006-394096,
394364-394472,394558-394657,395143-395307,395401-395506,
395590-395894,396003-396241,397036-397114,397189-397327,
398004-398054,398316-398770,398961-399158,399199-399261,
400212-400436,400706-400988,401109-401170
Length = 1368
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 155 LSEIVEKDISMHVEEILEKWELC 223
LSE+V+ D++ E ++ W LC
Sbjct: 243 LSELVQDDLAAVAEGLIYTWRLC 265
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 98 GILDSEDNADDKKDALEG-ILSEIVEKDISMHVEEILEKWELCRPNDEE 241
G++DSE +L G LS + + S +E+ E+W DEE
Sbjct: 315 GVIDSEYVVHQGIPSLGGPSLSSKIRRQSSAELEKFKERWNRAVREDEE 363
>06_03_1179 + 28209397-28209448,28211803-28212167
Length = 138
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 2 HEAAAVSEFEPWLI 43
H++ A+SE EPW++
Sbjct: 66 HDSIALSELEPWMV 79
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 133 KRCLGRYIIGDSGKRHFYAC 192
++CLGR I G GK AC
Sbjct: 179 EKCLGRRICGQCGKNFNLAC 198
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 71 EGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMHVEEILEKW 214
E V +S + + D A+ +KD +G++ + E+D V E+ +K+
Sbjct: 284 EHVIAEGMSLLKHATDAANSRKDEKKGVVVGLPEQDFVRSVIELHDKY 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,738,817
Number of Sequences: 37544
Number of extensions: 86072
Number of successful extensions: 291
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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