Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G10
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 27 1.8
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 27 2.3
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 27 2.3
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 27 2.3
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 27 2.3
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 26 3.1
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 25 5.4
AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical ... 25 5.4
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 25 7.1
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 25 7.1
U22831-7|AAK20065.1| 140|Caenorhabditis elegans Hypothetical pr... 25 7.1
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 25 7.1
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 131 KKDALEGILSEIVEKDISMHVEEILEKWEL 220
KK A E SE + +S+H+ E+ EKW L
Sbjct: 533 KKSAAELFCSEKKSERLSLHMLEMTEKWLL 562
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 29 EPWLIEKLRSLKTDEGVFGSYISGILDSEDN 121
EPW ++K S K DEGV + G LD+ +N
Sbjct: 485 EPWFVQKPDSKKEDEGVL--IVRG-LDTAEN 512
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 29 EPWLIEKLRSLKTDEGVFGSYISGILDSEDN 121
EPW ++K S K DEGV + G LD+ +N
Sbjct: 485 EPWFVQKPDSKKEDEGVL--IVRG-LDTAEN 512
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 119 NADDKKDALEGILSEIVEKDISMHVEEILEKWELCRPNDEEP 244
NA+D KDA+ +E+ + +V EIL +W RP+ + P
Sbjct: 806 NAEDYKDAIVMPWYRNLEQPVFYYVAEILPEW---RPSSKFP 844
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 68 DEGVFGSYISGILDSEDNADDKKDALEGILSEIVEKDISMHVEEILEKWE 217
D G I G + E +A D +A E + S EK+ VE+I E W+
Sbjct: 994 DGGFTHPVIDGAIVLEKDAIDFINAWEKLESGRAEKEEKQRVEKIHENWK 1043
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 17 VSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEK 175
V EFE W+ +K+ ++ D G ++ + + D + + L+++VE+
Sbjct: 1887 VDEFEQWMADKMANMPRDLGRDVKHVHSLWQHHEALDKEIHNSQPRLAKLVEE 1939
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 17 VSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEK 175
V EFE W+ +K+ ++ D G ++ + + D + + L+++VE+
Sbjct: 1887 VDEFEQWMADKMANMPRDLGRDVKHVHSLWQHHEALDKEIHNSQPRLAKLVEE 1939
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 17 VSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEK 175
V EFE W+ +K+ ++ D G ++ + + D + + L+++VE+
Sbjct: 1887 VDEFEQWMADKMANMPRDLGRDVKHVHSLWQHHEALDKEIHNSQPRLAKLVEE 1939
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 80 FGSYISGILDSEDNADDKKD 139
FG+YI LDS+D+A D D
Sbjct: 9 FGNYIGPELDSDDDAGDIDD 28
>AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical
protein H16O14.1 protein.
Length = 977
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 125 DDKKDALEGILSEIVEKDISMHVEEILEKWELCRPNDEEP 244
+++ L+ + +KDI H+E + + +L R N+E P
Sbjct: 804 EERNQYLKNLNKSDRDKDIQNHLEIVTRERKLSRINEEAP 843
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 104 LDSEDNADDKKDALEGILSEIVEKDISMH 190
+D ++ +DD+ D + + +IVE+D H
Sbjct: 771 IDPQEISDDQDDTVPDVPDQIVEQDNQSH 799
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 104 LDSEDNADDKKDALEGILSEIVEKDISMH 190
+D ++ +DD+ D + + +IVE+D H
Sbjct: 768 IDPQEISDDQDDTVPDVPDQIVEQDNQSH 796
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
gene nameprotein 278 protein.
Length = 1130
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 47 KLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILSEIVEKD 178
K R T GVF +++S + D + A +K+ E EK+
Sbjct: 995 KKRMSITSHGVFQNFVSQMKDKREEASEKRTRKEAEKKAEKEKE 1038
>U22831-7|AAK20065.1| 140|Caenorhabditis elegans Hypothetical
protein F47D12.3 protein.
Length = 140
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 75 EFLVATFQVF*IVKITQMIKKMPWKVYYRR 164
E LVA + F + K +M+KK WK+ +R
Sbjct: 101 ESLVAEAEFFGLEKYREMLKKKLWKLTGKR 130
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 143 LEGILSEIVEKDISMHVEEILEKWELCRPND 235
L+G+L+EI+E+ + + EK LC+ D
Sbjct: 96 LDGLLTEIIEESEEEMQKALNEKKTLCQDKD 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,065,302
Number of Sequences: 27780
Number of extensions: 80165
Number of successful extensions: 332
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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